Vkorc1l1 (vitamin K epoxide reductase complex subunit 1L1) - Rat Genome Database

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Pathways
Gene: Vkorc1l1 (vitamin K epoxide reductase complex subunit 1L1) Rattus norvegicus
Analyze
Symbol: Vkorc1l1 (Ensembl: Crcp)
Name: vitamin K epoxide reductase complex subunit 1L1 (Ensembl:CGRP receptor component)
RGD ID: 1303249
Description: Enables vitamin-K-epoxide reductase (warfarin-sensitive) activity. Involved in vitamin K metabolic process. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human VKORC1L1 (vitamin K epoxide reductase complex subunit 1 like 1); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103693015; vitamin K epoxide reductase complex subunit 1-like protein 1; vitamin K epoxide reductase complex, subunit 1-like 1; VKORC1-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,354,078 - 32,404,327 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21226,717,959 - 26,768,193 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,623,976 - 26,768,225 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1227,869,566 - 27,914,949 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,480,094 - 28,525,477 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,541,586 - 27,586,969 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,218,825 - 30,268,990 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,222,701 - 30,268,990 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl816,287,804 - 16,333,603 (+)Ensemblrn6Rnor6.0
Rnor_5.0816,361,530 - 16,411,734 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41227,764,873 - 27,813,093 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1228,435,669 - 28,481,785 (-)NCBICelera
RGSC_v3.11227,628,088 - 27,676,309 (-)NCBI
Cytogenetic Map12q12-q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3-epoxyphylloquinone  (EXP,ISO)
2-methylcholine  (ISO)
4-hydroxycoumarin  (ISO)
acenocoumarol  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
Bromadiolone  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
carbon nanotube  (ISO)
cocaine  (EXP)
Coumachlor  (ISO)
Coumatetralyl  (ISO)
dehydroacetic acid  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicoumarol  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
fluindione  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
glafenine  (EXP)
indole-3-methanol  (EXP)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ozone  (ISO)
phenindione  (ISO)
phenprocoumon  (ISO)
phylloquinone  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
Soman  (EXP)
testosterone  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
vinclozolin  (EXP)
vitamin K  (EXP)
vitamin K epoxide  (EXP,ISO)
warfarin  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. VKORC1L1, an enzyme rescuing the vitamin K 2,3-epoxide reductase activity in some extrahepatic tissues during anticoagulation therapy. Hammed A, etal., J Biol Chem. 2013 Oct 4;288(40):28733-42. doi: 10.1074/jbc.M113.457119. Epub 2013 Aug 8.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Mutations in VKORC1 cause warfarin resistance and multiple coagulation factor deficiency type 2. Rost S, etal., Nature 2004 Feb 5;427(6974):537-41.
Additional References at PubMed
PMID:21367861   PMID:24532791  


Genomics

Comparative Map Data
Vkorc1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,354,078 - 32,404,327 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21226,717,959 - 26,768,193 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,623,976 - 26,768,225 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1227,869,566 - 27,914,949 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,480,094 - 28,525,477 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,541,586 - 27,586,969 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,218,825 - 30,268,990 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,222,701 - 30,268,990 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl816,287,804 - 16,333,603 (+)Ensemblrn6Rnor6.0
Rnor_5.0816,361,530 - 16,411,734 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41227,764,873 - 27,813,093 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1228,435,669 - 28,481,785 (-)NCBICelera
RGSC_v3.11227,628,088 - 27,676,309 (-)NCBI
Cytogenetic Map12q12-q13NCBI
VKORC1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38765,865,772 - 65,959,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl765,873,074 - 65,959,563 (+)Ensemblhg38GRCh38
GRCh37765,338,061 - 65,424,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36764,975,692 - 65,057,237 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34764,782,406 - 64,863,950NCBI
Celera766,693,876 - 66,775,381 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef761,525,480 - 61,607,209 (+)NCBIHuRef
CHM1_1765,433,455 - 65,515,064 (+)NCBICHM1_1
T2T-CHM13v2.0767,087,926 - 67,181,682 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2764,675,776 - 64,757,319 (+)NCBI
Vkorc1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,970,950 - 130,015,533 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,970,811 - 130,015,533 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm39 Ensembl5129,981,812 - 130,021,255 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385129,942,109 - 129,986,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,941,970 - 129,986,692 (+)Ensemblmm10GRCm38
MGSCv375130,417,983 - 130,458,761 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365128,365,952 - 128,407,011 (+)NCBIMGSCv36mm8
MGSCv365130,226,816 - 130,267,594 (+)NCBIMGSCv36mm8
Celera5126,981,358 - 126,985,732 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Vkorc1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,356,208 - 8,374,898 (+)Ensembl
ChiLan1.0NW_0049554568,316,107 - 8,374,898 (+)NCBIChiLan1.0ChiLan1.0
VKORC1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2681,182,942 - 81,267,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17129,510,089 - 129,595,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0760,111,428 - 60,196,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1764,702,962 - 64,720,313 (+)NCBIPanPan1.1PanPan1.1panPan2
VKORC1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16661,690 - 728,813 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6660,365 - 725,756 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha62,362,342 - 2,429,440 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.06467,059 - 534,229 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6465,863 - 534,222 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16410,520 - 477,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06404,868 - 471,978 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06575,779 - 642,971 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vkorc1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,282,506 - 126,302,445 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,733,367 - 7,759,582 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,733,420 - 7,775,691 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VKORC1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,688,898 - 16,764,251 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1316,691,143 - 16,764,097 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,941,581 - 17,016,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VKORC1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,535,346 - 1,617,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607015,030,003 - 15,110,314 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vkorc1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,322,077 - 8,388,939 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247408,322,329 - 8,388,939 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Vkorc1l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11624,030,087 - 24,078,584 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Vkorc1l1
430 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:46
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000024691
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)122963663737764351Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH142529  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,725,634 - 26,725,746 (-)MAPPERmRatBN7.2
mRatBN7.21226,725,634 - 26,725,746 (+)MAPPERmRatBN7.2
Rnor_6.01230,226,501 - 30,226,612NCBIRnor6.0
Rnor_6.0816,330,142 - 16,330,253NCBIRnor6.0
Rnor_5.0816,403,949 - 16,404,060UniSTSRnor5.0
Rnor_5.01232,163,437 - 32,163,548UniSTSRnor5.0
RGSC_v3.41227,769,545 - 27,769,656UniSTSRGSC3.4
Celera1228,439,460 - 28,439,571UniSTS
RH 3.4 Map12446.6UniSTS
Cytogenetic Map12q13UniSTS
UniSTS:489243  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4814,632,003 - 14,632,641UniSTSRGSC3.4
Celera815,750,715 - 15,751,353UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map12q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 133 57 61 41 87 41 299 169 11 124 71 73 20 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024691   ⟹   ENSRNOP00000024691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl816,287,804 - 16,333,603 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079546   ⟹   ENSRNOP00000070920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,222,701 - 30,268,990 (-)Ensembl
RefSeq Acc Id: NM_203338   ⟹   NP_976083
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,357,954 - 32,404,226 (-)NCBI
mRatBN7.21226,721,835 - 26,768,114 (-)NCBI
Rnor_6.01230,222,701 - 30,268,990 (-)NCBI
Rnor_5.0816,361,530 - 16,411,734 (+)NCBI
RGSC_v3.41227,764,873 - 27,813,093 (-)RGD
Celera1228,435,669 - 28,481,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598418   ⟹   XP_017453907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,354,078 - 32,404,327 (-)NCBI
mRatBN7.21226,717,959 - 26,768,193 (-)NCBI
Rnor_6.01230,218,825 - 30,268,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089657   ⟹   XP_038945585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,354,078 - 32,404,322 (-)NCBI
mRatBN7.21226,717,959 - 26,768,191 (-)NCBI
Protein Sequences
Protein RefSeqs NP_976083 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453907 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945585 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAR82918 (Get FASTA)   NCBI Sequence Viewer  
  EDM13478 (Get FASTA)   NCBI Sequence Viewer  
  EDM13479 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000100633
GenBank Protein Q6TEK3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_976083   ⟸   NM_203338
- UniProtKB: Q6TEK3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017453907   ⟸   XM_017598418
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZWM1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070920   ⟸   ENSRNOT00000079546
RefSeq Acc Id: XP_038945585   ⟸   XM_039089657
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000024691   ⟸   ENSRNOT00000024691

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6TEK3-F1-model_v2 AlphaFold Q6TEK3 1-176 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303249 AgrOrtholog
BioCyc Gene G2FUF-19512 BioCyc
Ensembl Genes ENSRNOG00000000901 Ensembl
  ENSRNOG00000018291 Ensembl
  ENSRNOG00000058750 Ensembl
  ENSRNOG00000083064 ENTREZGENE
Ensembl Transcript ENSRNOT00000122615 ENTREZGENE
Gene3D-CATH 1.20.1440.130 UniProtKB/Swiss-Prot
InterPro VKOR UniProtKB/Swiss-Prot
  VKOR_sf UniProtKB/Swiss-Prot
  VKORC1/VKORC1L1 UniProtKB/Swiss-Prot
KEGG Report rno:399684 UniProtKB/Swiss-Prot
NCBI Gene 399684 ENTREZGENE
PANTHER PTHR14519 UniProtKB/Swiss-Prot
  VITAMIN K EPOXIDE REDUCTASE COMPLEX SUBUNIT 1-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam VKOR UniProtKB/Swiss-Prot
PhenoGen Vkorc1l1 PhenoGen
RatGTEx ENSRNOG00000000901 RatGTEx
  ENSRNOG00000018291 RatGTEx
  ENSRNOG00000058750 RatGTEx
  ENSRNOG00000083064 RatGTEx
SMART VKc UniProtKB/Swiss-Prot
UniProt A0A8I5ZWM1 ENTREZGENE
  A0ABK0LBR3_RAT UniProtKB/TrEMBL
  A0ABK0LTA0_RAT UniProtKB/TrEMBL
  A6J0N9_RAT UniProtKB/TrEMBL
  A6J0P0_RAT UniProtKB/TrEMBL
  Q6TEK3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Vkorc1l1  vitamin K epoxide reductase complex subunit 1L1  Vkorc1l1  vitamin K epoxide reductase complex, subunit 1-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-03-09 Vkorc1l1  vitamin K epoxide reductase complex, subunit 1-like 1  LOC103693015  vitamin K epoxide reductase complex subunit 1-like protein 1  Data merged from RGD:9409402 737654 PROVISIONAL
2014-08-25 LOC103693015  vitamin K epoxide reductase complex subunit 1-like protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Vkorc1l1  vitamin K epoxide reductase complex, subunit 1-like 1      Symbol and Name status set to approved 1299863 APPROVED
2005-07-14 Vkorc1l1  vitamin K epoxide reductase complex, subunit 1-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_drugs mutations are associated with warfarin-resistant strains 1303972
gene_product putative subunit of vitamin K epoxide reductase complex required for blood coagulation 1303972