Selenok (selenoprotein K) - Rat Genome Database

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Gene: Selenok (selenoprotein K) Rattus norvegicus
Analyze
Symbol: Selenok
Name: selenoprotein K
RGD ID: 1303129
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; positive regulation of cytokine production; and positive regulation of defense response to virus by host. Predicted to act upstream of or within several processes, including macrophage derived foam cell differentiation; positive regulation of leukocyte migration; and respiratory burst after phagocytosis. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 4,4'-sulfonyldiphenol; acrylamide.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: heat shock protein; LOC290549; Selk
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Selenok-ps1   Selenok-ps2   Selenok-ps3   Selenok-ps4   Selenok-ps5   Selenok-ps6  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,158,601 - 5,167,183 (+)NCBIGRCr8
mRatBN7.2165,152,066 - 5,160,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,152,066 - 5,159,188 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,164,061 - 5,172,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,309,490 - 6,318,047 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,161,535 - 5,170,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,035,926 - 6,044,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,035,926 - 6,044,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,967,057 - 5,975,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,306,405 - 5,314,721 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,306,458 - 5,314,718 (+)NCBI
Celera1610,023,918 - 10,032,235 (-)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 85 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SelenokRat1,2-dimethylhydrazine multiple interactionsISOSelenok (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SELENOK mRNACTDPMID:22206623
SelenokRat1,2-dimethylhydrazine decreases expressionISOSelenok (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SELK mRNACTDPMID:22206623
SelenokRat17beta-estradiol increases expressionISOSELENOK (Homo sapiens)6480464Estradiol results in increased expression of SELENOK mRNACTDPMID:20106945
SelenokRat17beta-estradiol multiple interactionsISOSELENOK (Homo sapiens)6480464[Estradiol co-treated with Norethindrone Acetate] results in increased expression of SELENOK mRNACTDPMID:22217510
SelenokRat17beta-estradiol decreases expressionISOSELENOK (Homo sapiens)6480464Estradiol results in decreased expression of SELENOK mRNACTDPMID:23019147
SelenokRat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOSELENOK (Homo sapiens)6480464Dihydrotestosterone results in increased expression of SELK mRNACTDPMID:29581250
SelenokRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:31826744
SelenokRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSelenok (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SELENOK mRNACTDPMID:26377647
SelenokRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSelenok (Mus musculus)6480464[Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of SELENOK mRNA and AHR protein inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of SELENOK mRNA]CTDPMID:15034205 and PMID:16214954
SelenokRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSelenok (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of SELENOK mRNACTDPMID:15034205 and PMID:18796159
SelenokRat2-palmitoylglycerol increases expressionISOSELENOK (Homo sapiens)64804642-palmitoylglycerol results in increased expression of SELENOK mRNACTDPMID:37199045
SelenokRat4,4'-diaminodiphenylmethane decreases expressionISOSelenok (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of SELENOK mRNACTDPMID:18648102
SelenokRat4,4'-sulfonyldiphenol increases expressionISOSelenok (Mus musculus)6480464bisphenol S results in increased expression of SELENOK mRNACTDPMID:39298647
SelenokRat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SELENOK mRNACTDPMID:36041667
SelenokRatacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of SELK mRNACTDPMID:28959563
SelenokRataflatoxin B1 decreases methylationISOSELENOK (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of SELENOK geneCTDPMID:27153756
SelenokRatammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of SELENOK mRNACTDPMID:16483693
SelenokRatarsane multiple interactionsISOSELENOK (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of SELENOK mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of SELENOK mRNACTDPMID:39836092
SelenokRatarsenic acid decreases expressionISOSelenok (Mus musculus)6480464arsenic acid results in decreased expression of SELENOK mRNACTDPMID:19429247
SelenokRatarsenic atom multiple interactionsISOSELENOK (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of SELENOK mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of SELENOK mRNACTDPMID:39836092

1 to 20 of 85 rows

Biological Process
1 to 20 of 47 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SelenokRatcalcium ion transport involved_inIBAMGI:1931466 and PANTHER:PTN0004239741600115GO_REF:0000033GO_CentralGO_REF:0000033
SelenokRatcalcium ion transport acts_upstream_of_or_withinIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatcalcium ion transport involved_inIEAUniProtKB-KW:KW-01091600115GO_REF:0000043UniProtGO_REF:0000043
SelenokRatcalcium ion transport acts_upstream_of_or_withinISOSelenok (Mus musculus)1624291MGI:4941878 PMID:21220695 and PMID:21849499RGDPMID:21220695 and PMID:21849499
SelenokRatendoplasmic reticulum calcium ion homeostasis involved_inIBAFB:FBgn0030350 and PANTHER:PTN0004239741600115GO_REF:0000033GO_CentralGO_REF:0000033
SelenokRatestablishment of localization in cell acts_upstream_of_or_withinIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatestablishment of localization in cell acts_upstream_of_or_withinISOSelenok (Mus musculus)1624291MGI:4941878 PMID:21849499RGDPMID:21849499
SelenokRatintrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress involved_inISOSELENOK (Homo sapiens)1624291 PMID:20692228RGDPMID:20692228
SelenokRatintrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress involved_inIEAUniProtKB:Q9Y6D0 and ensembl:ENSP000004188131600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatmacrophage derived foam cell differentiation acts_upstream_of_or_withinISOSelenok (Mus musculus)1624291MGI:4941878 PMID:23444136RGDPMID:23444136
SelenokRatmacrophage derived foam cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
SelenokRatneutrophil migration acts_upstream_ofISOSelenok (Mus musculus)1624291MGI:4941878 PMID:21220695RGDPMID:21220695
SelenokRatneutrophil migration acts_upstream_ofIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatpositive regulation of chemokine production involved_inISOSelenok (Mus musculus)1624291 PMID:21220695RGDPMID:21220695
SelenokRatpositive regulation of chemokine production involved_inIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatpositive regulation of defense response to virus by host involved_inISOSelenok (Mus musculus)1624291 PMID:21220695RGDPMID:21220695
SelenokRatpositive regulation of defense response to virus by host involved_inIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatpositive regulation of interleukin-6 production involved_inISOSelenok (Mus musculus)1624291 PMID:21220695RGDPMID:21220695
SelenokRatpositive regulation of interleukin-6 production involved_inIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 47 rows

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SelenokRatendoplasmic reticulum located_inISSUniProtKB:Q9Y6D01600115GO_REF:0000024UniProtGO_REF:0000024
SelenokRatendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
SelenokRatendoplasmic reticulum located_inIEAUniProtKB:Q9Y6D0 and ensembl:ENSP000004188131600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatendoplasmic reticulum located_inISOSELENOK (Homo sapiens)1624291 PMID:16962588 and PMID:25368151RGDPMID:16962588 and PMID:25368151
SelenokRatendoplasmic reticulum membrane located_inISOSELENOK (Homo sapiens)1624291 PMID:21220695RGDPMID:21220695
SelenokRatendoplasmic reticulum membrane located_inIEAUniProtKB:Q9JLJ1 and ensembl:ENSMUSP000001078871600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatendoplasmic reticulum membrane located_inIEAUniProtKB:Q9Y6D0 and ensembl:ENSP000004188131600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatendoplasmic reticulum membrane is_active_inIBAMGI:1931466 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
SelenokRatendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-00971600115GO_REF:0000044UniProtGO_REF:0000044
SelenokRatendoplasmic reticulum membrane located_inISOSelenok (Mus musculus)1624291 PMID:21220695RGDPMID:21220695
SelenokRatendoplasmic reticulum membrane located_inISSUniProtKB:Q9JLJ11600115GO_REF:0000024UniProtGO_REF:0000024
SelenokRatGolgi apparatus is_active_inIBAFB:FBgn0030350 and PANTHER:PTN0004239741600115GO_REF:0000033GO_CentralGO_REF:0000033
SelenokRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
SelenokRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
SelenokRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
SelenokRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
1 to 16 of 16 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SelenokRatidentical protein binding enablesISOSELENOK (Homo sapiens)1624291UniProtKB:Q9Y6D0 and PMID:25117454RGDPMID:25117454
SelenokRatidentical protein binding enablesIEAUniProtKB:Q9Y6D0 and ensembl:ENSP000004188131600115GO_REF:0000107EnsemblGO_REF:0000107
SelenokRatprotein binding enablesISOSELENOK (Homo sapiens)1624291UniProtKB:O15393-2 more ...RGDPMID:25368151 and PMID:32296183


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Characterization of mammalian selenoproteomes. Kryukov GV, etal., Science 2003 May 30;300(5624):1439-43.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:15277470   PMID:16962588   PMID:20692228   PMID:21220695   PMID:21849499   PMID:23444136   PMID:25117454   PMID:25368151   PMID:27645994  



Selenok
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,158,601 - 5,167,183 (+)NCBIGRCr8
mRatBN7.2165,152,066 - 5,160,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,152,066 - 5,159,188 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,164,061 - 5,172,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,309,490 - 6,318,047 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,161,535 - 5,170,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,035,926 - 6,044,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,035,926 - 6,044,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,967,057 - 5,975,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,306,405 - 5,314,721 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,306,458 - 5,314,718 (+)NCBI
Celera1610,023,918 - 10,032,235 (-)NCBICelera
Cytogenetic Map16p16NCBI
SELENOK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,884,417 - 53,891,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,884,417 - 53,891,885 (-)EnsemblGRCh38hg38GRCh38
GRCh37353,918,444 - 53,925,886 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,894,266 - 53,901,029 (-)NCBINCBI36Build 36hg18NCBI36
Celera353,886,504 - 53,893,267 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,967,743 - 53,974,504 (-)NCBIHuRef
CHM1_1353,870,843 - 53,877,606 (-)NCBICHM1_1
T2T-CHM13v2.0353,917,657 - 53,925,099 (-)NCBIT2T-CHM13v2.0
Selenok
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391429,690,337 - 29,697,031 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1429,690,265 - 29,697,619 (+)EnsemblGRCm39 Ensembl
GRCm381429,968,380 - 29,975,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1429,968,308 - 29,975,662 (+)EnsemblGRCm38mm10GRCm38
MGSCv371430,781,566 - 30,788,260 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361428,797,426 - 28,804,083 (+)NCBIMGSCv36mm8
Celera1426,224,212 - 26,230,906 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1418.36NCBI
Selenok
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554303,870,925 - 3,876,636 (-)NCBIChiLan1.0ChiLan1.0
SELENOK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2253,877,081 - 53,883,873 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1353,881,755 - 53,888,643 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0353,823,135 - 53,829,957 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1355,044,026 - 55,050,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl355,044,789 - 55,047,450 (-)Ensemblpanpan1.1panPan2
SELENOK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,109,095 - 36,115,792 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,109,148 - 36,115,856 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,046,592 - 36,053,289 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,383,192 - 36,389,892 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,383,245 - 36,389,965 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12035,825,109 - 35,831,800 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,183,706 - 36,190,402 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,400,934 - 36,407,849 (+)NCBIUU_Cfam_GSD_1.0
Selenok
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118171,407,613 - 171,414,243 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364734,545,961 - 4,552,822 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364734,546,186 - 4,552,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,990,182 - 35,996,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,989,461 - 35,996,824 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21339,060,209 - 39,067,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12215,267,915 - 15,274,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041151,616,322 - 151,623,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenok
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248223,309,170 - 3,314,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Selenok
18 total Variants

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:50
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000020284
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat

1 to 10 of 30 rows
BF389195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,156,741 - 5,156,985 (+)MAPPERmRatBN7.2
Rnor_6.0166,040,602 - 6,040,845NCBIRnor6.0
Rnor_5.0165,971,733 - 5,971,976UniSTSRnor5.0
RGSC_v3.4165,311,081 - 5,311,326UniSTSRGSC3.4
Celera1610,027,313 - 10,027,556UniSTS
RH 3.4 Map1611.4UniSTS
Cytogenetic Map16p16UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000020284   ⟹   ENSRNOP00000020284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,152,066 - 5,159,188 (+)Ensembl
Rnor_6.0 Ensembl166,035,926 - 6,044,239 (+)Ensembl
RefSeq Acc Id: NM_207589   ⟹   NP_997472
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,158,601 - 5,167,183 (+)NCBI
mRatBN7.2165,152,066 - 5,160,648 (+)NCBI
Rnor_6.0166,035,926 - 6,044,240 (+)NCBI
Rnor_5.0165,967,057 - 5,975,371 (+)NCBI
RGSC_v3.4165,306,405 - 5,314,721 (+)RGD
Celera1610,023,918 - 10,032,235 (-)RGD
Sequence:
Protein RefSeqs NP_997472 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88086 (Get FASTA)   NCBI Sequence Viewer  
  AAP73816 (Get FASTA)   NCBI Sequence Viewer  
  EDL89012 (Get FASTA)   NCBI Sequence Viewer  
  EDL89013 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020284.7
  ENSRNOP00000102170
GenBank Protein P59798 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_997472   ⟸   NM_207589
- UniProtKB: Q5I0Q3 (UniProtKB/Swiss-Prot),   P59798 (UniProtKB/Swiss-Prot),   A0A0G2JSN7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020284   ⟸   ENSRNOT00000020284


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699906
Promoter ID:EPDNEW_R10430
Type:initiation region
Name:Selenok_1
Description:selenoprotein K
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0166,035,977 - 6,036,037EPDNEW


1 to 21 of 21 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-12208 BioCyc
Ensembl Genes ENSRNOG00000014624 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000078830 ENTREZGENE
Ensembl Transcript ENSRNOT00000020284.7 UniProtKB/Swiss-Prot
  ENSRNOT00000132513 ENTREZGENE
IMAGE_CLONE IMAGE:7326199 IMAGE-MGC_LOAD
InterPro Se_SelK/SelG UniProtKB/Swiss-Prot
KEGG Report rno:290549 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108512 IMAGE-MGC_LOAD
NCBI Gene 290549 ENTREZGENE
PANTHER PTHR16875 UniProtKB/Swiss-Prot
  SELENOPROTEIN K UniProtKB/Swiss-Prot
Pfam SelK_SelG UniProtKB/Swiss-Prot
PhenoGen Selenok PhenoGen
RatGTEx ENSRNOG00000014624 RatGTEx
  ENSRNOG00000078830 RatGTEx
UniProt A0A0G2JSN7 ENTREZGENE, UniProtKB/TrEMBL
  P59798 ENTREZGENE
  Q5I0Q3 ENTREZGENE
  SELK_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q5I0Q3 UniProtKB/Swiss-Prot
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-28 Selenok  selenoprotein K  Selk  selenoprotein K  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Selk  selenoprotein K  LOC290549  heat shock protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-11 LOC290549  heat shock protein      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference