Selenok (selenoprotein K) - Rat Genome Database

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Gene: Selenok (selenoprotein K) Rattus norvegicus
Analyze
Symbol: Selenok
Name: selenoprotein K
RGD ID: 1303129
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; positive regulation of cytokine production; and positive regulation of defense response to virus by host. Predicted to act upstream of or within several processes, including macrophage derived foam cell differentiation; positive regulation of leukocyte migration; and respiratory burst after phagocytosis. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 4,4'-sulfonyldiphenol; acrylamide.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: heat shock protein; LOC290549; Selk
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Selenok-ps1   Selenok-ps2   Selenok-ps3   Selenok-ps4   Selenok-ps5   Selenok-ps6  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,158,601 - 5,167,183 (+)NCBIGRCr8
mRatBN7.2165,152,066 - 5,160,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,152,066 - 5,159,188 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,164,061 - 5,172,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,309,490 - 6,318,047 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,161,535 - 5,170,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,035,926 - 6,044,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,035,926 - 6,044,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,967,057 - 5,975,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,306,405 - 5,314,721 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,306,458 - 5,314,718 (+)NCBI
Celera1610,023,918 - 10,032,235 (-)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Characterization of mammalian selenoproteomes. Kryukov GV, etal., Science 2003 May 30;300(5624):1439-43.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15277470   PMID:16962588   PMID:20692228   PMID:21220695   PMID:21849499   PMID:23444136   PMID:25117454   PMID:25368151   PMID:27645994  


Genomics

Comparative Map Data
Selenok
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,158,601 - 5,167,183 (+)NCBIGRCr8
mRatBN7.2165,152,066 - 5,160,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,152,066 - 5,159,188 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,164,061 - 5,172,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,309,490 - 6,318,047 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,161,535 - 5,170,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,035,926 - 6,044,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,035,926 - 6,044,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,967,057 - 5,975,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,306,405 - 5,314,721 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,306,458 - 5,314,718 (+)NCBI
Celera1610,023,918 - 10,032,235 (-)NCBICelera
Cytogenetic Map16p16NCBI
SELENOK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,884,417 - 53,891,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,884,417 - 53,891,885 (-)EnsemblGRCh38hg38GRCh38
GRCh37353,918,444 - 53,925,886 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,894,266 - 53,901,029 (-)NCBINCBI36Build 36hg18NCBI36
Celera353,886,504 - 53,893,267 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,967,743 - 53,974,504 (-)NCBIHuRef
CHM1_1353,870,843 - 53,877,606 (-)NCBICHM1_1
T2T-CHM13v2.0353,917,657 - 53,925,099 (-)NCBIT2T-CHM13v2.0
Selenok
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391429,690,337 - 29,697,031 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1429,690,265 - 29,697,619 (+)EnsemblGRCm39 Ensembl
GRCm381429,968,380 - 29,975,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1429,968,308 - 29,975,662 (+)EnsemblGRCm38mm10GRCm38
MGSCv371430,781,566 - 30,788,260 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361428,797,426 - 28,804,083 (+)NCBIMGSCv36mm8
Celera1426,224,212 - 26,230,906 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1418.36NCBI
Selenok
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554303,870,925 - 3,876,636 (-)NCBIChiLan1.0ChiLan1.0
SELENOK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2253,877,081 - 53,883,873 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1353,881,755 - 53,888,643 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0353,823,135 - 53,829,957 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1355,044,026 - 55,050,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl355,044,789 - 55,047,450 (-)Ensemblpanpan1.1panPan2
SELENOK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,109,095 - 36,115,792 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,109,148 - 36,115,856 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,046,592 - 36,053,289 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,383,192 - 36,389,892 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,383,245 - 36,389,965 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12035,825,109 - 35,831,800 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,183,706 - 36,190,402 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,400,934 - 36,407,849 (+)NCBIUU_Cfam_GSD_1.0
Selenok
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118171,407,613 - 171,414,243 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364734,545,961 - 4,552,822 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364734,546,186 - 4,552,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,990,182 - 35,996,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,989,461 - 35,996,824 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21339,060,209 - 39,067,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12215,267,915 - 15,274,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041151,616,322 - 151,623,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenok
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248223,309,170 - 3,314,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Selenok
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:50
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000020284
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat

Markers in Region
BF389195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,156,741 - 5,156,985 (+)MAPPERmRatBN7.2
Rnor_6.0166,040,602 - 6,040,845NCBIRnor6.0
Rnor_5.0165,971,733 - 5,971,976UniSTSRnor5.0
RGSC_v3.4165,311,081 - 5,311,326UniSTSRGSC3.4
Celera1610,027,313 - 10,027,556UniSTS
RH 3.4 Map1611.4UniSTS
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000020284   ⟹   ENSRNOP00000020284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,152,066 - 5,159,188 (+)Ensembl
Rnor_6.0 Ensembl166,035,926 - 6,044,239 (+)Ensembl
RefSeq Acc Id: NM_207589   ⟹   NP_997472
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,158,601 - 5,167,183 (+)NCBI
mRatBN7.2165,152,066 - 5,160,648 (+)NCBI
Rnor_6.0166,035,926 - 6,044,240 (+)NCBI
Rnor_5.0165,967,057 - 5,975,371 (+)NCBI
RGSC_v3.4165,306,405 - 5,314,721 (+)RGD
Celera1610,023,918 - 10,032,235 (-)RGD
Sequence:
RefSeq Acc Id: NP_997472   ⟸   NM_207589
- UniProtKB: Q5I0Q3 (UniProtKB/Swiss-Prot),   P59798 (UniProtKB/Swiss-Prot),   A0A0G2JSN7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020284   ⟸   ENSRNOT00000020284

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699906
Promoter ID:EPDNEW_R10430
Type:initiation region
Name:Selenok_1
Description:selenoprotein K
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0166,035,977 - 6,036,037EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303129 AgrOrtholog
BioCyc Gene G2FUF-12208 BioCyc
Ensembl Genes ENSRNOG00000014624 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055020634 UniProtKB/Swiss-Prot
  ENSRNOG00060013604 UniProtKB/Swiss-Prot
  ENSRNOG00065015314 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020284 UniProtKB/TrEMBL
  ENSRNOT00000020284.7 UniProtKB/Swiss-Prot
  ENSRNOT00055035208 UniProtKB/Swiss-Prot
  ENSRNOT00060023224 UniProtKB/Swiss-Prot
  ENSRNOT00065025395 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7326199 IMAGE-MGC_LOAD
InterPro Se_SelK/SelG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290549 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108512 IMAGE-MGC_LOAD
NCBI Gene 290549 ENTREZGENE
PANTHER PTHR16875 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SELENOPROTEIN K UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SelK_SelG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Selenok PhenoGen
RatGTEx ENSRNOG00000014624 RatGTEx
  ENSRNOG00055020634 RatGTEx
  ENSRNOG00060013604 RatGTEx
  ENSRNOG00065015314 RatGTEx
UniProt A0A0G2JSN7 ENTREZGENE, UniProtKB/TrEMBL
  P59798 ENTREZGENE
  Q5I0Q3 ENTREZGENE
  SELK_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q5I0Q3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-28 Selenok  selenoprotein K  Selk  selenoprotein K  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Selk  selenoprotein K  LOC290549  heat shock protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-11 LOC290549  heat shock protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference