Symbol:
Cdh15
Name:
cadherin 15
RGD ID:
1303000
Description:
Predicted to enable beta-catenin binding activity and cadherin binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell-cell adhesion mediated by cadherin; and cell-cell junction organization. Predicted to be located in Golgi apparatus; caveola; and neuromuscular junction. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 3. Orthologous to human CDH15 (cadherin 15); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-Tetrachlorodibenzofuran.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
cadherin-15; M-cadherin
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
CDH15 (cadherin 15) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):
Cdh15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Cdh15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
CDH15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
CDH15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Cdh15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
CDH15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CDH15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Cdh15 (cadherin 15) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
CDH15 (cadherin 15)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Cdh15 (cadherin 15)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
cdh15 (cadherin 15, type 1, M-cadherin (myotubule))
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
cdh15
Alliance
DIOPT (Ensembl Compara|OMA|OrthoFinder|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 67,812,169 - 67,834,986 (+) NCBI GRCr8 mRatBN7.2 19 50,903,757 - 50,927,151 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 50,903,638 - 50,927,105 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 57,700,635 - 57,720,963 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 58,381,063 - 58,401,389 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 60,599,254 - 60,619,583 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 55,669,661 - 55,689,986 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 55,669,626 - 55,689,992 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 66,373,237 - 66,396,730 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 53,182,536 - 53,194,779 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 53,187,414 - 53,199,660 (+) NCBI Celera 19 50,143,657 - 50,163,976 (+) NCBI Celera Cytogenetic Map 19 q12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Cdh15 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 67,812,169 - 67,834,986 (+) NCBI GRCr8 mRatBN7.2 19 50,903,757 - 50,927,151 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 50,903,638 - 50,927,105 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 57,700,635 - 57,720,963 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 58,381,063 - 58,401,389 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 60,599,254 - 60,619,583 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 55,669,661 - 55,689,986 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 55,669,626 - 55,689,992 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 66,373,237 - 66,396,730 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 53,182,536 - 53,194,779 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 53,187,414 - 53,199,660 (+) NCBI Celera 19 50,143,657 - 50,163,976 (+) NCBI Celera Cytogenetic Map 19 q12 NCBI
CDH15 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 89,171,748 - 89,195,492 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 89,171,748 - 89,195,492 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 89,238,156 - 89,261,900 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 87,765,664 - 87,789,401 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 87,765,663 - 87,789,400 NCBI Celera 16 74,303,777 - 74,327,730 (+) NCBI Celera Cytogenetic Map 16 q24.3 NCBI HuRef 16 74,937,029 - 74,960,595 (+) NCBI HuRef CHM1_1 16 90,649,453 - 90,672,880 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 95,251,870 - 95,275,698 (+) NCBI T2T-CHM13v2.0
Cdh15 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 123,575,113 - 123,594,136 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 123,574,705 - 123,594,136 (+) Ensembl GRCm39 Ensembl GRCm38 8 122,848,374 - 122,867,397 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 122,847,966 - 122,867,397 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 125,372,274 - 125,391,297 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 125,734,056 - 125,753,487 (+) NCBI MGSCv36 mm8 Celera 8 127,083,268 - 127,101,936 (+) NCBI Celera Cytogenetic Map 8 E1 NCBI cM Map 8 71.99 NCBI
Cdh15 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955541 2,881,525 - 2,893,653 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955541 2,881,374 - 2,893,885 (+) NCBI ChiLan1.0 ChiLan1.0
CDH15 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 98,955,721 - 98,979,974 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 104,871,254 - 104,895,421 (+) NCBI NHGRI_mPanPan1 PanPan1.1 Ensembl 16 89,543,888 - 89,562,843 (+) Ensembl panpan1.1 panPan2
CDH15 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 64,258,451 - 64,277,184 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 64,258,741 - 64,277,190 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 64,270,039 - 64,288,790 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 64,485,448 - 64,504,164 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 64,485,449 - 64,504,142 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 64,504,817 - 64,523,569 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 64,342,688 - 64,361,396 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 64,749,610 - 64,768,354 (-) NCBI UU_Cfam_GSD_1.0
Cdh15
CDH15
CDH15 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 5 74,542,174 - 74,563,753 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 5 74,550,637 - 74,563,850 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666047 974,596 - 995,473 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Cdh15
.
Predicted Target Of
Count of predictions: 62 Count of miRNA genes: 56 Interacting mature miRNAs: 60 Transcripts: ENSRNOT00000033352 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
2313395 Anxrr26 Anxiety related response QTL 26 aggression-related behavior trait (VT:0015014) tameness/aggressiveness composite score (CMO:0002136) 19 49976481 53225766 Rat 1578764 Stresp19 Stress response QTL 19 3.6 0.001 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 19 15630201 57337602 Rat 61350 Bp32 Blood pressure QTL 32 0.012 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 19 20483575 57337602 Rat 5135224 Leukc1 Leukocyte quantity QTL 1 eosinophil quantity (VT:0002602) blood eosinophil count (CMO:0000033) 19 44340214 55283277 Rat 724546 Kidm3 Kidney mass QTL 3 3.1 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 19 29322490 57337602 Rat 7411549 Bw130 Body weight QTL 130 5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 15455860 57337602 Rat 1358200 Insglur2 Insulin/glucose ratio QTL 2 4.1 blood glucose amount (VT:0000188) serum glucose level (CMO:0000543) 19 33838214 55283146 Rat 724566 Uae12 Urinary albumin excretion QTL 12 5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 2187927 56457239 Rat 1331737 Uae29 Urinary albumin excretion QTL 29 5.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 4096155 55283277 Rat 2298478 Eau8 Experimental allergic uveoretinitis QTL 8 0.0163 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 19 17154433 57337602 Rat
RH130502
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 19 50,926,206 - 50,926,413 (+) MAPPER mRatBN7.2 Rnor_6.0 19 55,689,756 - 55,689,962 NCBI Rnor6.0 Rnor_5.0 19 66,395,786 - 66,395,992 UniSTS Rnor5.0 RGSC_v3.4 19 53,194,549 - 53,194,755 UniSTS RGSC3.4 Celera 19 50,163,746 - 50,163,952 UniSTS RH 3.4 Map 19 705.41 UniSTS Cytogenetic Map 19 q12 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
68
67
36
25
36
6
184
97
93
34
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000033352 ⟹ ENSRNOP00000034685
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 50,913,569 - 50,927,105 (+) Ensembl Rnor_6.0 Ensembl 19 55,669,626 - 55,689,992 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000109297 ⟹ ENSRNOP00000094457
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 50,903,638 - 50,927,105 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000115712 ⟹ ENSRNOP00000078159
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 50,906,085 - 50,926,436 (+) Ensembl
RefSeq Acc Id:
NM_207613 ⟹ NP_997496
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 67,814,657 - 67,834,984 (+) NCBI mRatBN7.2 19 50,906,109 - 50,926,437 (+) NCBI Rnor_6.0 19 55,669,661 - 55,689,986 (+) NCBI Rnor_5.0 19 66,373,237 - 66,396,730 (+) NCBI RGSC_v3.4 19 53,182,536 - 53,194,779 (+) RGD Celera 19 50,143,657 - 50,163,976 (+) RGD
Sequence:
TCCCGCCGCTGCCCCCATGAGTTCTGCTCTGCTCTTCGCCCTCGGGCTGCTTGCCCAGAGCCTTGGCCTCTCCTGGGCAGTCCCTGAGCCTGAACCCAGCACCCTGTACCCCTGGCGCCGGGCATCAG
hide sequence
RefSeq Acc Id:
XM_039097879 ⟹ XP_038953807
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 67,812,169 - 67,834,986 (+) NCBI mRatBN7.2 19 50,903,757 - 50,927,151 (+) NCBI
RefSeq Acc Id:
NP_997496 ⟸ NM_207613
- Peptide Label:
precursor
- UniProtKB:
Q75NI5 (UniProtKB/TrEMBL), F1LQ16 (UniProtKB/TrEMBL), A0A8J8YP12 (UniProtKB/TrEMBL)
- Sequence:
MSSALLFALGLLAQSLGLSWAVPEPEPSTLYPWRRASAPGRVRRAWVIPPISVSENHKRLPYPLVQIKSDKQQLGSVIYSIQGPGVDEEPRNVFSIDKFTGRVYLNATLDREKTDRFRLRAFALDLGG
hide sequence
Ensembl Acc Id:
ENSRNOP00000034685 ⟸ ENSRNOT00000033352
RefSeq Acc Id:
XP_038953807 ⟸ XM_039097879
- Peptide Label:
isoform X1
- UniProtKB:
A0A8I6AM66 (UniProtKB/TrEMBL), A0A8J8YP12 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSRNOP00000094457 ⟸ ENSRNOT00000109297
Ensembl Acc Id:
ENSRNOP00000078159 ⟸ ENSRNOT00000115712
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2006-03-30
Cdh15
cadherin 15
Symbol and Name status set to approved
1299863 APPROVED
2005-02-14
Cdh15
cadherin 15
Symbol and Name status set to provisional
70820 PROVISIONAL
