Gene: C20h6orf136 (similar to human chromosome 6 open reading frame 136) Rattus norvegicus
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Symbol:
C20h6orf136 (Ensembl: 2310061I04Rik)
Name:
similar to human chromosome 6 open reading frame 136
RGD ID:
1302996
Description:
Orthologous to human C6orf136 (chromosome 6 open reading frame 136); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC294231; hypothetical protein MGC15854; hypothetical protein MGC:15854; MGC108866; MGC15854; RGD1302996; uncharacterized protein C6orf136 homolog
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 2,862,567 - 2,866,756 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 20 2,862,478 - 2,866,754 (+) Ensembl GRCr8 mRatBN7.2 20 2,857,840 - 2,861,952 (+) NCBI mRatBN7.2 mRatBN7.2 UTH_Rnor_SHR_Utx 20 2,909,600 - 2,913,708 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 20 2,914,570 - 2,918,678 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 20 2,940,739 - 2,944,849 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 20 3,364,787 - 3,368,923 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 3,364,814 - 3,368,923 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 20 5,462,189 - 5,466,448 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 20 3,005,613 - 3,009,722 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 20 283,823 - 287,969 (+) NCBI Celera RGSC_v3.1 20 3,005,824 - 3,009,939 (+) NCBI Cytogenetic Map 20 p12 NCBI
JBrowse:
References
Additional References at PubMed
Genomics
Comparative Map Data
C20h6orf136 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 2,862,567 - 2,866,756 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 20 2,862,478 - 2,866,754 (+) Ensembl GRCr8 mRatBN7.2 20 2,857,840 - 2,861,952 (+) NCBI mRatBN7.2 mRatBN7.2 UTH_Rnor_SHR_Utx 20 2,909,600 - 2,913,708 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 20 2,914,570 - 2,918,678 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 20 2,940,739 - 2,944,849 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 20 3,364,787 - 3,368,923 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 3,364,814 - 3,368,923 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 20 5,462,189 - 5,466,448 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 20 3,005,613 - 3,009,722 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 20 283,823 - 287,969 (+) NCBI Celera RGSC_v3.1 20 3,005,824 - 3,009,939 (+) NCBI Cytogenetic Map 20 p12 NCBI
C6orf136 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 30,647,133 - 30,653,207 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 30,647,033 - 30,653,210 (+) Ensembl hg38 GRCh38 GRCh37 6 30,614,910 - 30,620,984 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 30,722,780 - 30,728,963 (+) NCBI Build 36 Build 36 hg18 NCBI36 Build 34 6 30,723,186 - 30,728,857 NCBI Celera 6 32,212,933 - 32,219,096 (+) NCBI Celera Cytogenetic Map 6 p21.33 NCBI HuRef 6 30,414,983 - 30,420,920 (+) NCBI HuRef CHM1_1 6 30,616,924 - 30,623,095 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 30,511,313 - 30,517,381 (+) NCBI T2T-CHM13v2.0
2310061I04Rik Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 36,203,569 - 36,208,270 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 36,203,569 - 36,208,323 (-) Ensembl GRCm39 Ensembl GRCm39 GRCm38 17 35,892,677 - 35,897,378 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 35,892,677 - 35,897,431 (-) Ensembl mm10 GRCm38 MGSCv37 17 36,029,622 - 36,034,323 (-) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 17 35,500,730 - 35,505,444 (-) NCBI MGSCv36 mm8 Celera 17 39,401,928 - 39,406,638 (-) NCBI Celera Cytogenetic Map 17 B1 NCBI cM Map 17 18.75 NCBI
CUNH6orf136 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955583 653,994 - 657,385 (+) NCBI ChiLan1.0 ChiLan1.0
C5H6orf136 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 45,207,246 - 45,213,196 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 41,170,646 - 41,176,404 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 30,391,980 - 30,397,749 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 31,261,960 - 31,267,646 (+) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 31,262,032 - 31,267,457 (+) Ensembl panPan2 panpan1.1
C12H6orf136 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 12 456,534 - 460,512 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 12 456,657 - 460,510 (+) Ensembl canFam3 CanFam3.1 Dog10K_Boxer_Tasha 12 594,174 - 598,157 (+) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 12 599,757 - 603,738 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 12 599,882 - 603,736 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 12 457,426 - 461,411 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 12 526,890 - 530,863 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 12 595,503 - 599,468 (+) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
CUNH6orf136
C7H6orf136 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 23,185,599 - 23,190,292 (+) Ensembl susScr11 Sscrofa11.1 Sscrofa11.1 7 23,185,588 - 23,190,299 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 26,907,653 - 26,912,226 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
C17H6orf136
CUNH6orf136
C18H6orf136
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 33 Count of miRNA genes: 30 Interacting mature miRNAs: 31 Transcripts: ENSRNOT00000001077 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction 
