Advanced Search (OLGA)

Gene: Cchcr1 (coiled-coil alpha-helical rod protein 1) Rattus norvegicus

Analyze

Symbol:

Cchcr1

Name:

coiled-coil alpha-helical rod protein 1

RGD ID:

1302992

Description:

Predicted to be involved in protein export from nucleus. Predicted to be active in centriole. Orthologous to human CCHCR1 (coiled-coil alpha-helical rod protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C6orf18; Hcr; HCR (a-helix coiled-coil rod homolog)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,210,383 - 3,223,187 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	3,210,384 - 3,222,765 (-)	Ensembl				GRCr8
mRatBN7.2	20	3,205,675 - 3,218,437 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,205,676 - 3,218,308 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	3,267,009 - 3,279,385 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,271,980 - 3,284,356 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	3,296,167 - 3,308,561 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	20	3,325,057 - 3,337,314 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	20	3,381,530 - 3,393,765 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	20	3,384,454 - 3,396,689 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	20	3,340,365 - 3,352,618 (-)	NCBI		F344_StmMcwi
Rnor_6.0	20	3,730,968 - 3,745,721 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,730,955 - 3,740,009 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	5,817,710 - 5,832,463 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	632,753 - 645,257 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia areata (ISS)

amphetamine abuse (ISO)

esophagus squamous cell carcinoma (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

CGP 52608 (ISO)

cisplatin (ISO)

Cuprizon (EXP)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

methamphetamine (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

ozone (EXP)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

quercetin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

protein export from nucleus (ISO)

Cellular Component

centriole (ISO)

cytoplasm (IEA,ISO)

cytosol (ISO)

nucleus (IEA)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16141233	PMID:23644468	PMID:25416956

Genomics

Comparative Map Data

Cchcr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,210,383 - 3,223,187 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	3,210,384 - 3,222,765 (-)	Ensembl				GRCr8
mRatBN7.2	20	3,205,675 - 3,218,437 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,205,676 - 3,218,308 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	3,267,009 - 3,279,385 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,271,980 - 3,284,356 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	3,296,167 - 3,308,561 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	20	3,325,057 - 3,337,314 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	20	3,381,530 - 3,393,765 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	20	3,384,454 - 3,396,689 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	20	3,340,365 - 3,352,618 (-)	NCBI		F344_StmMcwi
Rnor_6.0	20	3,730,968 - 3,745,721 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,730,955 - 3,740,009 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	5,817,710 - 5,832,463 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	632,753 - 645,257 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

CCHCR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	31,142,439 - 31,158,197 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	31,142,439 - 31,158,238 (-)	Ensembl			hg38	GRCh38
GRCh37	6	31,110,216 - 31,125,974 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	31,218,195 - 31,233,994 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	32,710,440 - 32,726,241 (-)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	30,912,688 - 30,928,437 (-)	NCBI		HuRef
CHM1_1	6	31,112,300 - 31,128,115 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	31,010,125 - 31,025,917 (-)	NCBI		T2T-CHM13v2.0

Cchcr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,827,914 - 35,841,912 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,827,997 - 35,841,912 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	35,517,049 - 35,531,015 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,517,100 - 35,531,015 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	35,654,061 - 35,667,960 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	35,125,229 - 35,139,059 (+)	NCBI		MGSCv36	mm8
Celera	17	39,032,059 - 39,045,883 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.69	NCBI

Cchcr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955583	978,825 - 989,793 (-)	Ensembl
ChiLan1.0	NW_004955583	979,138 - 989,267 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCHCR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	45,704,322 - 45,720,162 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	41,667,184 - 41,684,976 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	30,888,542 - 30,904,382 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	31,753,777 - 31,769,770 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	31,753,777 - 31,772,934 (-)	Ensembl			panPan2	panpan1.1

CCHCR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	842,093 - 855,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	837,993 - 854,978 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	979,507 - 992,408 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	97,441 - 110,398 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	97,456 - 114,270 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	845,729 - 858,576 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	913,919 - 926,858 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	981,523 - 994,431 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cchcr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	34,444,699 - 34,456,351 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936837	809,921 - 821,608 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936837	809,958 - 821,604 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCHCR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,543,752 - 23,558,052 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	23,543,919 - 23,558,150 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	27,275,511 - 27,289,702 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCHCR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	41,319,392 - 41,334,661 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	41,319,423 - 41,334,502 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	30,833,260 - 30,848,903 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cchcr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,770,208 - 24,785,437 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	24,770,308 - 24,781,717 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cchcr1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	8,725,394 - 8,738,172 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cchcr1
82 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	63
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000074049
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1533200	5306452	Rat
61474	Eae1	Experimental allergic encephalomyelitis QTL 1	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	20	1	6693431	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	6693431	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
724519	Bp144	Blood pressure QTL 144		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	20	1	3629303	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001002822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX883047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV126837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000074049 ⟹ ENSRNOP00000067117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	3,205,715 - 3,218,308 (-)	Ensembl
Rnor_6.0 Ensembl	20	3,730,968 - 3,739,968 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081015 ⟹ ENSRNOP00000074907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,730,968 - 3,739,968 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084918 ⟹ ENSRNOP00000073888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	3,205,676 - 3,218,057 (-)	Ensembl
Rnor_6.0 Ensembl	20	3,730,955 - 3,740,009 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,730,968 - 3,732,781 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120577 ⟹ ENSRNOP00000098218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	3,210,384 - 3,222,765 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120582 ⟹ ENSRNOP00000098223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	3,210,384 - 3,222,765 (-)	Ensembl

RefSeq Acc Id:

NM_001002822 ⟹ NP_001002822

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,765 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,057 (-)	NCBI
Dahl_SR_JrHsd	20	3,325,057 - 3,337,314 (-)	NCBI
Lyon_Normotensive	20	3,381,530 - 3,393,765 (-)	NCBI
Lyon_Hypertensive	20	3,384,454 - 3,396,689 (-)	NCBI
F344_StmMcwi	20	3,340,365 - 3,352,618 (-)	NCBI
Rnor_6.0	20	3,730,968 - 3,745,721 (-)	NCBI
Rnor_5.0	20	5,817,710 - 5,832,463 (-)	NCBI
Celera	20	632,753 - 645,257 (-)	RGD

Sequence:

show sequence

CGAGAAAGATTCAGACTAGGACTTAGGACTAGGAAGAGAAGCGGGTAGGAATTTCGGGGGTCGA
GTGAAAAAAAAAAAAACTTGAATTAACGGAAGTGGGGGAAAGGAGATGCTGTAGGACTCTGAAG
AGAGGTGCATCGGGGATGGAAATCCCCTAGGGGATAGAGTGCAACTGAAGCCAGTTACAGAGAG
GCACAGATGAGTTAGCAGGAAGCTGGCTTCCCAGCAACGGGCTTCCAGGCTGCGCGGGTTCCTC
CCTCGGGGATCCTAGGGAAGCCGCTTAACCCCACATGTGGCCTCATTCTTCTGGGGCCAGGCCT
TGGGCTAACCCTTTAATAGGAAATGACCCAGAAATCGTGACTCGATGGTGCCTAGATGGGCTTC
CCAACGGGCCTACCATTCCGTGGCGAGGACTGTGGAGACTGGGTTCCCTATACTGTGTTCAGAG
AGTCCTGAGCTGCAGGGACCGTAGACACTTAAGGAGGAAGGGGAACATAGGTGACTGGAGACAA
GAGCTAGAAGATTCATATAACGGGGAGATGCTGCCACCATCAGGTTTTGATGGGCTGGTTCCTC
CCTCCCACTTCCAAGCTCGACCCCTCTCAACCCTGCCAAGAATGGCCTCGACCTGGGCTTCAAA
CGTTCCCTTGGTCCAATCTCCGCCTGGCCAAGATGTCTTAGAGAGGCGGCTAGACACTCAGAGG
TCGACAGTGACCATGTGGGGACAGGATTTCTGTGGAGACAGGCAGGGGCTTGGGCGGAGAGGCA
GGTCTCTGGAGCTGGGGGTCTCCGGTGCCCTGAGCCAGCAGGCTGAGCTGATCTCTCGGCAGCT
CCAAGAGTTGAGGCTGCTGGAGGAGGAGGTCCGGACCCTTCGGGAGACCTCCCTGCAGCAGAAG
ATGAGGTTAGAGTCTCAGGCCGTGGAGCTGGATGCTCTCGCAGTGGCGGAGAAGGCCGGGCAAG
CCGAGGCCGAGGGCCTGCGCACCGCCTTGGCCGGAGCGGAAATGGTTCGGAAGAACCTGGAAGA
GGCGAAGCAGAAGGAGCTGGAGGAGATTCAGAGTCTGCACCAAGAGCAGCTGTCCTCCCTGACA
CAGGCTCACCAGAAGGCTCTCGACAGTCTGACCAGCAAGGCTGAGGACTTGGAGAAGTCTCTGA
ACAGCCTGGAAATGAAACAGGCAGGGGAAGCCAAGCAGCTGACTATGGCCCAGAAGGAGGCAGA
ACTGCTTAGGAATCAGCTGAGTAAGACCCAAGAAGAGCTGGAGGCTCAGGTGACCTTGGTGGAG
AATCTGAGGAAGTATGTAGGGGAACAAGTCCCTCCTGAGGTTCCTAGCCAGGCACGGGAGCTGG
AACAGAAGGAGCTGCTAGACACCTTGAAGCACTTGAAGGAGGACAGGACTAACCTTCAGGCCAC
CGTGGAGCTACTGCAGGTACGGGTACAGAGCCTCACACACATGCTCGCCCTGCAAGAAGAGGAG
CTGACCAGGAAGATTCATCCTCTAGACCCCTTGGAGCCCGAGTTTCCTAAGAAGTGCCGCTCGT
TGCTGCGCGGCTGGCGGGAGAAGGTGTTTGCCCTTATGGTGCAGCTCAAAGCCCAGGACCTGCA
GCACAGGGACTCCACCAAGCAGCTGAGGGACCAGGTAGCAGAGCTCCAGGAGCAAGTGACTGCC
CAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTACAAGACAAGACTGCACAGGTGGAGGTGG
AGCGGATGAGCACCAAGACCCTGAAGATGGAGCTGAGTCAGGCGCAGGAGGCCAGGTGGAGGCA
GGAGCAGCAGGCGGCCTCTGCTGAGGAGCAGCTGAAGTTCGTGGTCAGTGCTATGAACAGCACT
CAGGCCAGACTCCAGAGCACCATGACCAGGGTGGACCAGGCTGTAGCCCGGATTCCCAGCCTCT
GCAACCGGCTCAGCTATGCTGTCCGTAAGGTCCACACCATTAAAGGTTTGATGGCTCGAAAGTT
GGCTCTTGTTCAGTTGCGCCTGGAGAGCTGTCCCCCACCTGAACCTGCACCCCCACCGGACACG
GACCTGAGCCTTGAGTTGGAGCAGCTACGGGAAGAACGGAACCGCTTGGATGCAGAACTGCAGC
TAAGTGCCCACCTGATCCAACAGGAGGTGGGCCGGGTACGGGAGCAAGGAGAGGCAGAGCACCG
GCACCTGACCGAAGTAGCCCAGCAGTTGGAGCAGGAGCTGCAGCGTGCCCAGGAATCCCTGGCT
AGCGTTGGGCAGCAGCTGGAGGCAGCCCGTCAAGGCCAGCAGGAGAGCACAGAGGAAGCTGCCA
GCCTCCGTCAGGAGCTGACCCAGCAGCAGGAGATCTACGGGCAAGCTCTGCAAGAGAAGGTGGC
GGAGGTGGAAAGTCGGCTTCGGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACGAGGCCCGG
AGGGAGCAGGCCAAGGCTGTGGTTTCCTTGCGCCAGATCCAACACAAAGCCACTCTGGAAAAGG
AGCGGAATCAGGAGCTCAGGCGCCTGCAGGACGAGGCCCGGAAGGAAGAAGGGCAGCGGCTGAC
ACGGCGAGTGCAGGAGCTGGAGAGGGACAAGAACCTCATGCTGGCCACCTTGAAGCAAGAGGGT
CTCCTCTCCCGTTACAAGCAGCAGCGCCTGTTAGCAGTGCTTCCCTCGGGAGTGAGTAAGAAGT
GCAGCTCCCAGCCTGTAGAGCCCCCTGAGTCTGCAGCAGCTTCACCGTGCAAGGAGTCTATGAA
AGGCTCCCTGACTGTCCTGCTTGATAACCTGCAAGGCCTGAGCGAGGCCATCTCCAGAGACGAC
GCTATTTGTCTGGAAGATAACCAGAACACTAAGAGCCCTCCTTCCAATCCACTGCTGGGCCGGA
GCTGTCAGGAGGAGGAGTGAAGCTAGCCTGGAATTGGATCCCCAGGAGGGTTGGATGGGAGGAC
ATGGGGTGGGGCCAGCCTGGCCCTGCTCCCCAGCAAGCCTTGGGACCCCAGCTTCCACCAAGTT
CAAACTCTGTACTGAATAAAGATGGCTGGAATGGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039098936 ⟹ XP_038954864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,208 (-)	NCBI

RefSeq Acc Id:

XM_039098937 ⟹ XP_038954865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,208 (-)	NCBI

RefSeq Acc Id:

XM_039098938 ⟹ XP_038954866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,209 (-)	NCBI

RefSeq Acc Id:

XM_039098939 ⟹ XP_038954867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,208 (-)	NCBI

RefSeq Acc Id:

XM_039098941 ⟹ XP_038954869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,137 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,420 (-)	NCBI

RefSeq Acc Id:

XM_039098942 ⟹ XP_038954870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,027 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,420 (-)	NCBI

RefSeq Acc Id:

XM_039098943 ⟹ XP_038954871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,144 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,425 (-)	NCBI

RefSeq Acc Id:

XM_039098944 ⟹ XP_038954872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,145 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,437 (-)	NCBI

RefSeq Acc Id:

XM_039098946 ⟹ XP_038954874

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,063 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,404 (-)	NCBI

RefSeq Acc Id:

XM_039098948 ⟹ XP_038954876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,212,255 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,207,545 - 3,218,211 (-)	NCBI

RefSeq Acc Id:

XM_063279366 ⟹ XP_063135436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI

RefSeq Acc Id:

XM_063279367 ⟹ XP_063135437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI

RefSeq Acc Id:

XM_063279368 ⟹ XP_063135438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI

RefSeq Acc Id:

XM_063279369 ⟹ XP_063135439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,440 (-)	NCBI

RefSeq Acc Id:

XM_063279370 ⟹ XP_063135440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,187 (-)	NCBI

RefSeq Acc Id:

XM_063279371 ⟹ XP_063135441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,997 (-)	NCBI

RefSeq Acc Id:

XM_063279372 ⟹ XP_063135442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,015 (-)	NCBI

RefSeq Acc Id:

XM_063279373 ⟹ XP_063135443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,054 (-)	NCBI

RefSeq Acc Id:

XM_063279374 ⟹ XP_063135444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,434 (-)	NCBI

RefSeq Acc Id:

XM_063279375 ⟹ XP_063135445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,223,187 (-)	NCBI

RefSeq Acc Id:

XM_063279376 ⟹ XP_063135446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,383 - 3,222,072 (-)	NCBI

RefSeq Acc Id:

XR_005497313

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,647 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,675 - 3,218,210 (-)	NCBI

RefSeq Acc Id:

XR_005497314

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,647 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,821 - 3,218,210 (-)	NCBI

RefSeq Acc Id:

XR_005497315

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	3,210,648 - 3,222,997 (-)	NCBI
mRatBN7.2	20	3,205,821 - 3,218,210 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001002822	(Get FASTA)	NCBI Sequence Viewer
	XP_038954864	(Get FASTA)	NCBI Sequence Viewer
	XP_038954865	(Get FASTA)	NCBI Sequence Viewer
	XP_038954866	(Get FASTA)	NCBI Sequence Viewer
	XP_038954867	(Get FASTA)	NCBI Sequence Viewer
	XP_038954869	(Get FASTA)	NCBI Sequence Viewer
	XP_038954870	(Get FASTA)	NCBI Sequence Viewer
	XP_038954871	(Get FASTA)	NCBI Sequence Viewer
	XP_038954872	(Get FASTA)	NCBI Sequence Viewer
	XP_038954874	(Get FASTA)	NCBI Sequence Viewer
	XP_038954876	(Get FASTA)	NCBI Sequence Viewer
	XP_063135436	(Get FASTA)	NCBI Sequence Viewer
	XP_063135437	(Get FASTA)	NCBI Sequence Viewer
	XP_063135438	(Get FASTA)	NCBI Sequence Viewer
	XP_063135439	(Get FASTA)	NCBI Sequence Viewer
	XP_063135440	(Get FASTA)	NCBI Sequence Viewer
	XP_063135441	(Get FASTA)	NCBI Sequence Viewer
	XP_063135442	(Get FASTA)	NCBI Sequence Viewer
	XP_063135443	(Get FASTA)	NCBI Sequence Viewer
	XP_063135444	(Get FASTA)	NCBI Sequence Viewer
	XP_063135445	(Get FASTA)	NCBI Sequence Viewer
	XP_063135446	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05620	(Get FASTA)	NCBI Sequence Viewer
	CAE84022	(Get FASTA)	NCBI Sequence Viewer
	EDL86767	(Get FASTA)	NCBI Sequence Viewer
	EDL86768	(Get FASTA)	NCBI Sequence Viewer
	EDL86769	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000098218
	ENSRNOP00000098218.2
	ENSRNOP00000098223
	ENSRNOP00000098223.2

RefSeq Acc Id:

NP_001002822 ⟸ NM_001002822

- UniProtKB:

A0A0G2K6P2 (UniProtKB/TrEMBL), A6KTB3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWPHSSGARPWANPLIGNDPEIVTRWCLDGLPNGPTIPWRGLWRLGSLYCVQRVLSCRDRRHLR
RKGNIGDWRQELEDSYNGEMLPPSGFDGLVPPSHFQARPLSTLPRMASTWASNVPLVQSPPGQD
VLERRLDTQRSTVTMWGQDFCGDRQGLGRRGRSLELGVSGALSQQAELISRQLQELRLLEEEVR
TLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKELEEIQS
LHQEQLSSLTQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQE
ELEAQVTLVENLRKYVGEQVPPEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSL
THMLALQEEELTRKIHPLDPLEPEFPKKCRSLLRGWREKVFALMVQLKAQDLQHRDSTKQLRDQ
VAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQQAASAEEQL
KFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMARKLALVQLRLESCP
PPEPAPPPDTDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQ
ELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVESRLREQLS
DTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARKEEGQRLTRRVQELERDKN
LMLATLKQEGLLSRYKQQRLLAVLPSGVSKKCSSQPVEPPESAAASPCKESMKGSLTVLLDNLQ
GLSEAISRDDAICLEDNQNTKSPPSNPLLGRSCQEEE

hide sequence

Ensembl Acc Id:

ENSRNOP00000073888 ⟸ ENSRNOT00000084918

Ensembl Acc Id:

ENSRNOP00000074907 ⟸ ENSRNOT00000081015

Ensembl Acc Id:

ENSRNOP00000067117 ⟸ ENSRNOT00000074049

RefSeq Acc Id:	XP_038954872 ⟸ XM_039098944
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954871 ⟸ XM_039098943
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954869 ⟸ XM_039098941
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954870 ⟸ XM_039098942
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954874 ⟸ XM_039098946
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954866 ⟸ XM_039098938
- Peptide Label:	isoform X3
- UniProtKB:	A6KTB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954867 ⟸ XM_039098939
- Peptide Label:	isoform X5
- UniProtKB:	A6KTB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954865 ⟸ XM_039098937
- Peptide Label:	isoform X2
- UniProtKB:	A6KTB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954864 ⟸ XM_039098936
- Peptide Label:	isoform X1
- UniProtKB:	A6KTB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954876 ⟸ XM_039098948
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063135445 ⟸ XM_063279375
- Peptide Label:	isoform X10
- UniProtKB:	Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135440 ⟸ XM_063279370
- Peptide Label:	isoform X8
- UniProtKB:	Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135443 ⟸ XM_063279373
- Peptide Label:	isoform X9
- UniProtKB:	A6KTB4 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135442 ⟸ XM_063279372
- Peptide Label:	isoform X9
- UniProtKB:	A6KTB4 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135436 ⟸ XM_063279366
- Peptide Label:	isoform X4
- UniProtKB:	A6KTB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135437 ⟸ XM_063279367
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063135441 ⟸ XM_063279371
- Peptide Label:	isoform X9
- UniProtKB:	A6KTB4 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135438 ⟸ XM_063279368
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135439 ⟸ XM_063279369
- Peptide Label:	isoform X7
- UniProtKB:	Q0D2L7 (UniProtKB/TrEMBL), Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135444 ⟸ XM_063279374
- Peptide Label:	isoform X10
- UniProtKB:	Q6MG25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135446 ⟸ XM_063279376
- Peptide Label:	isoform X11
- UniProtKB:	Q6MG25 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098218 ⟸ ENSRNOT00000120577

Ensembl Acc Id:

ENSRNOP00000098223 ⟸ ENSRNOT00000120582

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K6P2-F1-model_v2	AlphaFold	A0A0G2K6P2	1-653	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1302992	AgrOrtholog
BioCyc Gene	G2FUF-4744	BioCyc
Ensembl Genes	ENSRNOG00000050233	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000120577	ENTREZGENE
	ENSRNOT00000120577.2	UniProtKB/TrEMBL
	ENSRNOT00000120582	ENTREZGENE
	ENSRNOT00000120582.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7453057	IMAGE-MGC_LOAD
InterPro	HCR	UniProtKB/TrEMBL
KEGG Report	rno:406196	UniProtKB/TrEMBL
MGC_CLONE	MGC:124923	IMAGE-MGC_LOAD
NCBI Gene	406196	ENTREZGENE
PANTHER	COILED-COIL ALPHA-HELICAL ROD PROTEIN 1	UniProtKB/TrEMBL
	PTHR46822	UniProtKB/TrEMBL
Pfam	HCR	UniProtKB/TrEMBL
PhenoGen	Cchcr1	PhenoGen
RatGTEx	ENSRNOG00000050233	RatGTEx
UniProt	A0A0G2K6P2	ENTREZGENE
	A0ABK0L385_RAT	UniProtKB/TrEMBL
	A0ABK0L9X4_RAT	UniProtKB/TrEMBL
	A6KTB3	ENTREZGENE, UniProtKB/TrEMBL
	A6KTB4	ENTREZGENE, UniProtKB/TrEMBL
	Q0D2L7	ENTREZGENE, UniProtKB/TrEMBL
	Q6MG25	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-01	Cchcr1	coiled-coil alpha-helical rod protein 1	Hcr	HCR (a-helix coiled-coil rod homolog)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-28	Hcr				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Send us a Message

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI