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Gene: Xirp2 (xin actin-binding repeat containing 2) Rattus norvegicus

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Symbol:

Xirp2

Name:

xin actin-binding repeat containing 2

RGD ID:

1302980

Description:

Predicted to enable actin filament binding activity and alpha-actinin binding activity. Predicted to be involved in actin filament organization; positive regulation of protein localization; and regulation of actin filament organization. Predicted to act upstream of or within cardiac muscle tissue morphogenesis; cell-cell junction organization; and ventricular septum development. Predicted to be located in Z disc and cell-cell junction. Predicted to colocalize with focal adhesion and stress fiber. Human ortholog(s) of this gene implicated in depressive disorder. Orthologous to human XIRP2 (xin actin binding repeat containing 2); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; acrylamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-xin; cardiomyopathy associated 3; cardiomyopathy-associated protein 3; Cmya3; L-NAME induced actin cytoskeletal protein; L-NAME-induced actin cytoskeletal protein; LACS; xin actin-binding repeat-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	72,534,175 - 72,621,056 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	72,534,146 - 72,621,056 (+)	Ensembl				GRCr8
mRatBN7.2	3	52,126,213 - 52,213,094 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	51,870,092 - 52,213,091 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	55,498,043 - 55,591,613 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	64,081,635 - 64,175,194 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	61,847,934 - 61,934,807 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	53,563,207 - 53,658,113 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	53,563,194 - 53,658,132 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	60,181,174 - 60,274,635 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	49,414,869 - 49,502,136 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	51,697,264 - 51,784,744 (+)	NCBI		Celera
RGSC_v3.1	3	49,311,240 - 49,398,505 (+)	NCBI
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

blepharophimosis (ISO)

Congenital Heart Defects, Multiple Types, 4 (ISO)

depressive disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

alpha-Zearalanol (EXP)

benzatropine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

CGP 52608 (ISO)

coumarin (ISO)

decabromodiphenyl ether (ISO)

dioxygen (EXP,ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

haloperidol (ISO)

methyl methanesulfonate (ISO)

perfluorooctanoic acid (EXP)

pioglitazone (ISO)

potassium dichromate (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IEA)

actin filament organization (IBA)

cardiac muscle tissue morphogenesis (ISO)

cell-cell junction organization (ISO)

positive regulation of protein localization (ISO)

regulation of actin filament organization (ISO,ISS)

ventricular septum development (ISO)

Cellular Component

anchoring junction (IEA)

cell junction (IEA)

cell-cell junction (ISO)

focal adhesion (IBA,IEA,ISO)

stress fiber (IBA,IEA,ISO)

Z disc (ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,IEA,ISO)

alpha-actinin binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Mutation burden analysis of six common mental disorders in African Americans by whole genome sequencing.	Liu Y, etal., Hum Mol Genet. 2022 Nov 10;31(22):3769-3776. doi: 10.1093/hmg/ddac129.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:15454575	PMID:17046827	PMID:20360251	PMID:22871113	PMID:35352799

Genomics

Comparative Map Data

Xirp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	72,534,175 - 72,621,056 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	72,534,146 - 72,621,056 (+)	Ensembl				GRCr8
mRatBN7.2	3	52,126,213 - 52,213,094 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	51,870,092 - 52,213,091 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	55,498,043 - 55,591,613 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	64,081,635 - 64,175,194 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	61,847,934 - 61,934,807 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	53,563,207 - 53,658,113 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	53,563,194 - 53,658,132 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	60,181,174 - 60,274,635 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	49,414,869 - 49,502,136 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	51,697,264 - 51,784,744 (+)	NCBI		Celera
RGSC_v3.1	3	49,311,240 - 49,398,505 (+)	NCBI
Cytogenetic Map	3	q21	NCBI

XIRP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	166,888,480 - 167,259,753 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	166,888,480 - 167,259,753 (+)	Ensembl			hg38	GRCh38
GRCh37	2	167,744,990 - 168,116,263 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	167,468,221 - 167,824,509 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	161,368,680 - 161,725,410 (+)	NCBI		Celera
Cytogenetic Map	2	q24.3	NCBI
HuRef	2	159,625,428 - 159,996,667 (+)	NCBI		HuRef
CHM1_1	2	167,750,858 - 168,122,133 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	167,346,432 - 167,717,651 (+)	NCBI		T2T-CHM13v2.0

Xirp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	67,276,343 - 67,356,964 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	67,004,178 - 67,356,959 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	67,446,000 - 67,526,620 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	67,173,834 - 67,526,615 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	67,284,059 - 67,364,663 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	67,246,841 - 67,327,445 (+)	NCBI		MGSCv36	mm8
Celera	2	69,121,528 - 69,202,070 (+)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	39.31	NCBI

Xirp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	7,052,613 - 7,131,792 (-)	Ensembl
ChiLan1.0	NW_004955449	7,054,636 - 7,131,668 (-)	NCBI	ChiLan1.0	ChiLan1.0

XIRP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	69,534,910 - 69,901,422 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	69,549,886 - 69,916,398 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	54,445,543 - 54,516,773 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	171,919,285 - 171,990,122 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	171,642,482 - 171,989,732 (+)	Ensembl			panPan2	panpan1.1

XIRP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	12,160,013 - 12,234,663 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	11,939,793 - 12,234,270 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	12,233,694 - 12,308,249 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	12,281,195 - 12,355,878 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	12,057,239 - 12,355,868 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	12,367,566 - 12,440,332 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	12,347,127 - 12,413,286 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	12,464,320 - 12,538,902 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Xirp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	129,399,501 - 129,441,169 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	12,176,498 - 12,190,641 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	12,176,543 - 12,243,510 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XIRP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	73,422,267 - 73,741,134 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	73,665,876 - 73,741,046 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	82,522,547 - 82,597,615 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	15	q15-q22	NCBI

XIRP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	52,382,131 - 52,759,563 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	52,705,531 - 52,753,355 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	146,764,839 - 146,818,771 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Xirp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624787	4,912,862 - 5,002,551 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624787	4,912,941 - 4,998,889 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Xirp2
912 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	222
Count of miRNA genes:	140
Interacting mature miRNAs:	180
Transcripts:	ENSRNOT00000048300
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	59863663	73704481	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

D2Jcs24

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	52,147,545 - 52,147,837 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	53,584,551 - 53,584,842	NCBI	Rnor6.0
Rnor_5.0	3	60,202,495 - 60,202,786	UniSTS	Rnor5.0
RGSC_v3.4	3	49,436,175 - 49,436,466	UniSTS	RGSC3.4
Celera	3	51,718,222 - 51,718,513	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
6	12	61	68	53	51	22	19	22	6	164	112	11	41	16	37	29	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_201989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF466694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048300 ⟹ ENSRNOP00000048045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	72,534,186 - 72,621,056 (+)	Ensembl
mRatBN7.2 Ensembl	3	52,126,242 - 52,213,091 (+)	Ensembl
Rnor_6.0 Ensembl	3	53,563,194 - 53,658,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101680 ⟹ ENSRNOP00000090056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	72,570,091 - 72,621,056 (+)	Ensembl
mRatBN7.2 Ensembl	3	52,162,133 - 52,213,091 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117778 ⟹ ENSRNOP00000079592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	72,534,146 - 72,621,056 (+)	Ensembl
mRatBN7.2 Ensembl	3	51,870,092 - 52,213,091 (+)	Ensembl

RefSeq Acc Id:

NM_201989 ⟹ NP_973718

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	72,534,186 - 72,621,056 (+)	NCBI
mRatBN7.2	3	52,126,226 - 52,213,094 (+)	NCBI
Rnor_6.0	3	53,563,245 - 53,658,113 (+)	NCBI
Rnor_5.0	3	60,181,174 - 60,274,635 (+)	NCBI
RGSC_v3.4	3	49,414,869 - 49,502,136 (+)	RGD
Celera	3	51,697,264 - 51,784,744 (+)	RGD

Sequence:

show sequence

AGCTGGTCTCCACTCTGCTGGTTGCTTTCAGGGGACTGGGAAATTTGCTGTATCTCAAACAGGG
AGGAACCTTCCGAGTGAAGAGTTGCAAATCCATAGAGCATTTCTACGGAGATAGGGTCAATTCT
GGTACAAAGAGACCTTCAACCTTACTAAGCCGGGAGACGTGAGTACTGCTGGGACTGAGGACCA
GTCGGATCTCCTAGAGGCGCTGTCCCTGAAGGAGAGGATGGCTAGGTACCAGGCAGCTGTTTCA
CGGGGCGACACCCGCAGCTTCTCGGCTAATGTCATGGAAGAATCAGACTTGTGCACCGTGCCTG
GTGGTTTAGCCAAGATGAAGAGACAATTTGAAAAGGATGAAATGACTTCAACCTGCAATGCCTT
CTCTGAGTATCAATACCAACATGAGAGCAGATCTGAGCAGGAGGCAATCCACAACAGGCAAGAA
ATAAGAAGGAATGAAGAAGAAGTTTCTAAAGGACACAGAACTGATGTCTTCAAAGCTGAAATGA
TGTCACATCTTGAAAAGCACACGGAGGAAACAAACCAAGCTTCACAGTTTCGTCAATATGTTCA
AGAAACAGTCATTGATACACCAGAAGACGAAGAGATTCCTAAGGTTTCCACTAAGATTTTAAAA
GAGCAATTTGAAAAGACTGCCCAGGAAAACTTCCTCTACTCTGATAAAGAAACAACAACCCCAG
CCAAGTGTATAAAGATTGAAAATGACAGTGAAGAAACCTTAAAGCCATCATCGGCTATGGGTAC
CTCTTCTTATACTTCAGCCAGGCAAAGCAAGGAAACTTCAACCTCAAGTTATAGTAATCACAGT
CTGACTTCAACAATCCTGGCACAAGAAAAGGGCACTCCTTCAGGAAAGATGGAAGAATTTCCTC
CTCCCCCACCTGATGTTTTTCAAACACCAATGGATGTGACAGCATTTTCCCAGTCCCCTGAATT
CCCCAGCCCTCCTAGAAGACTGCCAATGCCCAGAGATGTATATTCCAAGCAACGAAATTTGTAT
GAATTAAACCGTTTATATAGGCATATCCATCCTGAGTTAAGAAAAAACTTAGAAAAAGATTATA
TCAGTGAGGTTTCTGAAATTGTTTCTAGTCACATAAACTCAGGGAACTCGATATCAGCAGGTGT
ACAACAAGCTCGGTATGTTTTCGAAAATACGAATGACAGTTCTCAGAAAGATTTGAGCTCAGAA
AGAGAAAACCTGGAGTGGGATGAAATTCTGAAAGGAGAGGTGCAGTCAATTCGATGGATTTTTG
AGAATCAGCCATTAGATTCTATCAACCAAGGTTTTACAGATGAAGCGTACACTTCCAAAGGCAT
TGCTGACCAAGAACTCATTGCTGGGGGTGACGTGAAATATACGACTTGGATGTTTGAAACTCAG
CCAATAGATGCATTGGGAGTTCCTTCTGCTGGCACTGAAGAAAACACTGAGAAAATTCCTGAGC
TAGCTAAAGGAGATGTTTGCACAGCAAGGTGGATGTTTGAAACAAGGCCTTTAGACTCAATGAA
CAAAATGCATGAATGGGAAGATGAAACGGCATCTACTTTTATAAAGGACATAACTGGGGGAGAT
GTCAAGACTGTGAGATACATGTTTGAAACTCAACAACTGGATCAACTTGGACAGCTTCACTCAG
TGGATGAAATGAACTTATTACAACTCAGATCAGAGCTCAAAGAAATTAAAGGAAATGTTAAGAG
AAGCATAAAATGTTTCGAAACTCAACCACTGTATGTCATTAGAGATGGTTCAGGCCAAATGCTA
GAAATTAAAACTGTGCAGAGAGAAGACATTGAAAAGGGAGATGTAAGGACAGCACGCTGGATGT
TTGAAACGCAGCCTTTGGACACAATAAAACAAGACATCACGGAAATTAAAGTTGTTCGAGGAAT
ATCCATGGAGGAAAATGTCAAAGGCGAGGTGGGTAGAGCAAGGTGGTTATTTGAAACTCAACCA
CTGGAGAAAATCAAAGAAGAGTCAGGTGAGGCTGTCCTGAAAACAGAAGCAGTTGTAGGGATAG
ATGTGTCTAAAAAGTGTTGGATGTTTGAAACGCAGCCATTAGACACTCTAAAACAATCTCCTGA
TACAGAGAGTGTATCACCTGAAGAGAGGATAGGAGGTGACGTAAAAACCACCAAACATCTGTTA
GAAACACTCCCAATAGAGGCCTTAAAAGACAGCCCAGATGTTGGAAAGCTTCAAAAAATCACTG
CCTCTGAGGAAGAAAAGGGCGATGTTAAGCACCAAAAATGGGTTTTTGAAACTCAACGTTTAGA
AGATATTAGAGAAGATAAGAAGGAATATACCCAGACAGTGAAGCTAGAAGCAGTGGACAGAGGG
CATGTGAAGAACTATACACATATCTTCGAATCCAATAATCTAATTAAGGTTGATGCATCACATC
AAATTGAGGTGGAAGGAGTCACAAGAGGCACTGTGGAGTTGAATAAATCTCTCTTTGAGACAAC
CCCACTGTATGCCATTCAAGACCATCTTGGAAAATACCACCAAGTAAAGACAGTCCAGCAAGAA
GAAATAGTAAGGGGTGATGTAAGAAGCTGTAGATGGCTTTTTGAAACAAGGCCCATTGACCAAT
TTGACGAAAGCCTTCATAAATTTCAGATAATTAGAGGAATATCTGCTCAAGAAATACAGGCAGG
GAATGTGAAATCAGCTAGGTGGCTGTTTGAGACCCAACCTCTTGATTCAATTAAATATTTTAGC
AACGTGGAAGAAACAGACAGCAAAACTGAACAGAGTACTGATATTGTTAAGGGGGATGTCAAAA
CCTGTAAATGGCTATTTGAAACCCAGCCAATGGAGTCTCTTTATGAAAAAGCTTCCTTGATGAC
GAACTCAGAAGATATTCACAAAGGTGATGTTAGAACTTGTATGTGGCTATTTGAAACTCAGCCA
CTTGATGCCATAAAAAATGACTCTGAAGCCACAGTAAAACTGCAAACTGTGAAACAGGAGGAGA
TACAAGGTGGGGATGTCCGGACAGCATGTCTTCTTTTTGAGACAGAAAATCTGGACAACATACA
GGGCGGTGAAGGGAAAGAAACGAAGCCCGTGGAGATGGATATAGAATCTGGGGATGTCTCTGGC
ATGAAGTATAAGTTTGAAAATCAGTCCTTAGACTCTATAAGTTGCAGTTCGGAGAATGTTTTGA
ATAAGATCAAAACCCTAAAAATCGAAGACATTCAGAAAGGCAATGTTTTAAATTGTAGGTGGCT
ATTTGAAAATCAACCTATCGATATGATAAAAGAAAATCAAGAAGGTGATGGATTGGTTAAGACA
GTGACAGACATACAGGGTGGAGATGTGAGAAAGGGATGCTTCATTTTTGAGACGTTTTCTTTAG
ATGAGATTAAAGATGAATCTGATGTCATCAGCACCAGACAAACAAATACCGAGGAAGTAATAAA
AGGTGATGTAAAAAGCTACAAGATGCTTTTTGAAACACAACCACTCTATGCGATTCAAGACCAA
GAAGGGTTTTATCATGAAGTGACAACAGTTAAAAAAGAAGAAACTATTCATGGAGATGTACGAG
GAACAAGGTGGCTCTTTGAAACAAAACCGTTAGACTCAATTAACGCATCAGAAGATGTATACAT
TATTAAATCTGTCACTCAGGAAGACATTCAGAAGGGGGATGTGAGTTCTGTCAGATACCGATTT
GAAACACAACCACTGGATATGATTTCAGACAAATCACATAATATTATGCCCACTATTGACCATA
TTCAAGGAGGCAATGTGCAGATGAATAAACAACTATTCGAGTCTGAAGGTGGTGACAAGAAGAA
TTATGTAAGAACAGTGAGCATCAATGAAATACAAAAGGGCAATGTTAAGACTTCTACTTGGCTC
TTTGAAACTCACAGCATAGATGAGCTGGGAGAAGTGTCCACCTATGAAAATATCAAGACAGTCA
CCCAGGAAGACGTGCAGAAAGGTGACGTGAAGCAAGCAGTGTGGCTTTTTGAAAATCAGACATT
GGATTCCATTAAGGAACTTGATGAAAGTGACACCAAAATAACCAAAGAAGAAATTCCTCCGTCA
GATGTCAAGACAACAACGTGGCTCTTTGAAACGACACCTATTCACGAATTTAATGAAACTAGAA
TAGAAAAGGAAGAAATTATTGGTAAAAGCATTAAAGAAACCTTGGAAGACCTCTACTCTCAAAG
AGTGGTTGAAGCTCCCGGAATCATCATTGAAGCTGATGAAGTTGGGGATGTCAGAATGGCCAAA
TACAAGCTCATGAACCAAAGGACTCCTGAGATCCAGAAGGAAGAAGTTATCAGAGCTGACCTTG
GAAACATAATGATGAACTTGCTTTCCCAAAGAGACTGCACAAAAAAGGAGATATTTATCAGTGA
AGAGGAGAAGGGAAATGTCAATTTTACTAAAACCCAGTTATTAAACAGATCAATGGAATTCCAT
GCTGAAAAGGAAGAGATAGTAAGAGGGGATGTAAAACAAGCAATCCAAAAGCTGTTCTCTGAGG
AAAGGTGTGCAAAGAGAGGCATATTAATTCAAGAAGATGAAAAGGGAGATGTTAACATGACTAT
CTATTGTCTTCTTCATGAGAATGCTGGCGACAAGACTAAGCGTGAAGACATACTGGGAGGTGAT
GTGAGGCGCACTATTCATAACCTGTTGTCTTCCGCATCAAATGATAAAATATCTGAAAGGACAA
AAATCGATGCATCGGAGAGGGGAAATGTTCAGTTCTTCACAACATGCATAGAAACTGGAGCTTT
GGATTACCTCAAGCAACTCCAAACAGGGTCAAATGAAACACTCACAGCTAGAAAGCAAGAAGGG
GAGGAAGAAATAATTGGTGGTGATGTTGAGGGAACAAAATTCTTACTAAAGAAAAGACAGTCTT
CTATTGAACGCACTGTTAGTGAAACTGATATCATCCCAGGAGATGTGCGTAATACAGTTAAAGT
CTTCATGACGGAGCCCCAGAGTGCATCTTTTAAGACAGCGAAAGAAGAGATTGTAAAAGGTGAT
TTGAAATCAACCCTGAATTCTCTCAACCAGGCCATGAATCAGAAAGTAGTGGCTAAAACAGAAG
ATATTATGAAAGATGACAAGGCAGCTATACTCAAGTCACTTAAGGAGTCAGGTGGCAGACAGAA
AGAACATAAACAATCTGCTAGCATCTCTAGTGATATTGGGCAAGCTATTGAGTGCCTTGAAAAG
GCCACAAATACAAGGACAGAAATATTGAAAAAGGAGCTGATATTAGATGATCTTAAAACATCAT
TAAGGTCTTTGAAAGAAGAACAATACAGTTTCAAAGAGGTTGGTAAACAGGGAATGGTCAAAGA
TGTACTAGGATTCTCAGAGAGACAAGAACTAGGGATTCATCCAGCAGCTGTCCAGAGAGAGAAA
AAAAGCCTTCTTCAACCAGTGCCAGGACCATGTGAGCCAGCAATCAGGCAGCAAGCAGGACCAG
GCCCTCTTGATGAAGCTACACAGAAATCCTGCCATCGGTCTTTAACAGAAGAAAGAACTGAGGC
TAATCTTCCCAAAGCCCCTAAGGGCACTGTAAAGATTGTCATTGATCGAGAACAAAACAACGAT
GCTCTTGAGAAAAGCCTTAGGAAAATGTCTAATTCAGAACATAGAGCTATGAAAAATGTTTTAG
ACATGGGTGACAGAAGGGGTGTCTGGACAGAGAGCAAAGAGTGTCTGTGTAGTGACGACCATAT
GAGCAAATACGTAAGTGCAAGCATGTCAAGGAAGAAAAGTCTAAAGACCAAGGAATCAGAGAAT
GTGAGAGAATCGAAGGACGATGTGAGCTCCACCCAGTCTGTGGATAAAACATTTAGGAAGCAAC
AGACTCAAAACTGTGAACTGGGGAAGGATCACCAGAAGTCTCAGTTCCAGGATTCCTATGCGAA
GAATCAGAAAAATACCCAAAACATTAGTATGTCAGCAGAAACCCAAAGTTACAGACCAGACCCT
ACCCAACATCCAGTCAGCAATCCAGCTGGAGAAACGCTTGAGATGACAAGGGACTTTCAGAAGC
AAGCCTTGATAAGACAGGAAAAGCAGAATTCTAATAAAGATATGAGGAAAAATGACATGGGCCT
TCAACCTCTGCCTGTAGGGAAGGACGCACACAGTGCACCAGGAGTGACAGTCTCTGGGAAAAAC
CACAAAAGAACTCAGGCACCTGACAAGAAACAGAGAATTGATGTTTGTCTAGAAAGCCAGGACT
TTCTAATGAAGACAAATACTTCCAAGGAGTTAAAAATGGCAATGGAGAGGTCCTTTAATCCAGT
CAACCTTTACCCTGACTGTGGTGTAAAAGAAAATGAGGACGCCCTTCCTCCTCCATCTCCCCCT
CCTCCTCCTCCTTCCAATGCGTCATCTGAAATTGAATTTCCTCTCCCTCCTCCACCACCTATAA
TGCTGTTGCCTGAAAAAAATGAGTTTCCTCCCTCATCACCCACAGAGAAGTCAAGGGCTGAACT
TGAGAGCCTCCCAACCCTGCCTCTTCCTCCACCACCAGGAGATGAGAAATCTGATCAGGAATGT
CTACCAACATCCCTACCTCCTCCCCCTCCCACAGCTCCATCCCAACCAGCACATCTTCTTTCCT
CCTCTGTTTTAGAACATCACAGTGAAGCATTTTTACAACAGTATTCCCGAAAAGAAACCTTGGA
CTCTCATCAGCTTCACTCACAGGCTAAAATCCTAACAGGAAAATCACCACCCCCAACACTCCCC
AAACCCAAACTTCCCGAGAGAATCAAAGCTAAGATGAGCCAGGATTCACCAAGCGGTGAATTGG
AAAGATCTCTGTCAGATGTGGAAATTAAAACTACCCTCTCAAAGGATCAGAAAAGTTCGCTGGT
GGCAGAAAGCCGTGAGCACACAGAGGCCAAGCAAGAAGTATTCCGAAAAAGCCTTGGAAGAAAA
CAGCTGTCAATTAGCTCTGCAAACTCCCTCTCTCAGACAGTTCCAGAAATCCCAGCACCCAAGG
AAAAACAGACAGCACCCCTTGTTAAATCTCACTCATTCCCATCAGGTTCAGAACAACAAAGTCC
TAAGCCTTACATGAGAAAATTTAAGACACCCTTAATGATTGCGGAAGAAAAATACAGACAGCAA
AGGGAAGAGCTTGAGAAACAGAGACGGGAGAGTTCTTGCCATAGCATCATCAAAACAGAAACCC
AGCACCGCAGCTTATCAGAGAAAGAGAAAGAAACAGAGTTACAAAAAGCAGCTGAGGCAATGTC
CACTCCCAGAAAGGATTCAGACTTCACTAGGGCACAGCCCAACCTGGAACCTAAAAGCAAGGCT
GTGATCGCCAGTGAATGCTCTGAAAGCCAGCTCTCTACAGCTTCCGCATTGACAGTCGCTACCG
AGAGGCTCCAGCATGTTCTAGCCGCTTCAGACGATAAGCTTACCCTGCGACGGGAAGGCACACA
GAACTCAAGTGACACCCTACAATCGAAAACAGCTTGTGAGATTAACCAGAGTCACAAGGAATGT
AGGACAGAGCAAACATTTGAGCAACACGTGGAGAAGTTGCCCTTCCCCCAAACCAAACCCATTT
CCCCGAGTTTCAAAGTGAAAACTATCAGGCTTCCAGCTCTAGATCATACGCTGACTGAAACAGA
TCTCAGTTCTGAACGCCGCGTAAAGCAATCCGAAATTGACGTTCAAACCAGTACTAAAGAAATG
AATAAGGAAATTAAGAAAACCGAAGTGAGCACACAGTGTGATAATAAGCAATCTGTGGCTGAAA
AATATTTTCAATTACCTAAAACAGAGAAACGGGTGACGGTACAAATGCCCAAAGACTATGCAGC
GAAAAGTCATCAAAGCAAACTCCAAACAGTTCCCAAGAAGCATGGAGGATTGGGGGAGTTTGAC
AGAGGGAATGTCCTGGGGAGGGAAGGAAAAAATCAGGACTCCTCCATGAGCAGTACAAAAGAAA
GCAGGGTAATAGTTGAAAGAAAGCAAGAACATCTACAGGACCAGAGCGTACCAAGGTTAGTCCA
ACAAAAGATTATCGGTGAAAGCCTGGACTCACGGGTTCAGAATTTTCAGCAGACACAAACACAA
ACTTCTAGGATTGAGCATAAAGAACTGTCCCAACCTTACAGTGAGAAAAAATGTCTTAGAGACA
AGGACAAACAACAAAAACAGGTCTCCTCTAACACTGACGATTCAAAGCAAGAGATAACACAAAA
ACAATCTTCATTTTCCTCTGTGAGAGAATCCCAGCAGGATGGAGAAAAATGTGCCATAAATATA
TTGGAATTCTTGAGAAAACGTGAAGAACTACAGCAGATTTTGTCTAGGGTAAAACAGTTTGAAG
CAGATTCAAATAAAAGTGGCCTTAAAACATTTCAGACACTGTTAAATATTGCTCCGGTGTGGCT
GATAAGTGAGGAGAAAAGAGAATATGGAGTTCGTGTTGCCATGGAGAATAATTTAGAAAAAGTC
AAAGAAGAAATAATACATATTAAAACTCAAGCGGAGGAGATGCTCGTTCACTGTGAACACGTAA
TTCGAACAGCCATGATGGCTTCCCAAACAGGAAAGCAGAAAGATAAACCTACCAATCTTAATGA
AATGCCACTGAAAGTGTCTAATGTTAATCTCAGCTCTCATAAAGGCACTGAACAGAAAGAAAGT
AAAATTGTAGAAGAAAAATTAGCATCCCGCCAAGTAGCAACCCATTCTGAGGCAGCAACTCATA
ATCCTGCTAAAACATATCAGGAGGCTAAGGGGGACGATAGTAAGATGGCTCCTCCCTCTTTGAA
AACTCGCCCACCATCACCAACTTTCATCACCATAGAATCCACTGCCCGCCGAGCAGAAACATCC
ACTAAGAGTGAGCTTTCTCAGTCCCCTAAAAATAACAGTTGTGTTGAACCTCTACCCAGAAGAC
CCATGGAGCATACATCTAGGCTTCCCAGAACAAGTACATCACCTTCCCCACCAAGGAGTCGTTC
AGAACAACTTGTCAGACTCAAAGACACCACGGCCAGGTTAGCCAAAGGCACTATCCCTTGTTCA
CCAGGAACCCCGGTTCCAGTTGTCGAGAAGAGATCTGAAGTTGTCATGTCTCCAGCCACACTCC
GCAGGCAAATCAAGATAGAAAGCCGTGGCGGGGACTCCCCACCCACCATCACAATACCTGTGAG
TGTAAACCACCATGTCGTCAGTGGTTCCTTCAGAGAATCAGTAGACGCTCAAGAGGCAGTGAAG
AAAACAGAAAAAACAGAGACGTACGTTCATAAAGACAAAAAGAATTCTGTCAGTAGCGCAATGC
CAGAGACTGAAAGCTATGACGCAGTTGAAATCATCCGCAAGGTGGAAGGGCCCCACCTATCAGA
ACACAGGGAGAGATTTGAAGCCACCAATCAAACTGTTCAAATGGCTGAACATTTTCTGAATGGC
CACGAAAATGAAGTAAACAGATGGTTTAGGGAATTTGAGAATGGCCCAGTTTTCGGAGCAAAGA
CAGAGAGAAGAGCTTATGCAAATGGCGAAATAAACCACAACATGAAACAAGAGAGTCATACGTT
TTGCAAGGAGGAATTTGGATTAGAATCTTCTGAAACTGCTAATTTTACAGGCTTTTCTTACAGA
CATCCTAGAGAGCATCGAGCAAAAGCCCCTGCAACGCAGCCCAGGGTTCACTCTGAAGCCAGAG
CTCTCAATGAGCATTTTTTGAGCGTGGATGCGTTCGACAGTCAGATTGTAGAGTCACAGGTAGC
AACCTCATCATCACGGAGCTCAGAGGCAGGCAGATCTGGATTTGATTTTAAGCATGCCCCACCG
ACCTATGAAGATGTCATCGCTGGCCACATCCTAGATATTGCAGATTCGCCTACAAACCTCAGAC
GGAATTTTCAAAAGACATGGCAGGAGAGTGAAAGAGTTTTTAAGAGCGTGGGATATGAAACCTC
GGATGCACATGCGACAGAAATGAGCAGGGCCTTCCAGGAGGAATTGGCCTTTTTGAGTGAAACT
GTTGGTCCAAGACAAGGAAATCTGCATAATTTGTCAAAAGACGGTTTATCCAATGGAGTGCCTC
GTAGCAGACCAGCAGAATTTTCATAAATCTTGCTTCAGATGCCACCATTGCAGCAGTAAACTGA
GTTTGGGAAATTACGCATCACTTCACGGACAAATATACTGCAAGCCTCACTTTAAACAACTTTT
CAAGTCTAAAGGAAATTATGATGAAGGTTTTGGACACAAGCAACATAAAGACCGGTGGAATTGC
AAAAACCAAAGCAGCTTAGTTGATTCTATTCCCAGCGGAGAGCCCGATGCTCGGGAAAACCCTA
CAGCAGATATCCTCTTGCTTGGGGATCTTGCTGTACATGCAGACGCTTGTAACAGCAAGCGGCA
AGACAATGGTTTGAGAAAATGGGGGGAGAGGGGGAAATTAAAAATTGTTTGGCCTCCCTGTCAG
GAGATGCCTAAGAAAAACTCTCCCCCTGAGGAAGAACTCAAAGTGAATAAAGCTAAATGGCCAC
CTGAGTTGACCATCCCTGTTCCCTCAGAATTTAAAAGGGAGTCACTGACCGAACACGTGAAAAT
GTTGGAGAGTCAGGGGCAAGAACAAGATCACCTCCCTGACTTGCAACCCTGCCAACGCATTTGT
CAGAAAGAGGACATTACAGGCATCAAAGAAATAAAAGGGTACGAAGAAAGAAATGATGAGAAAG
AAGCAAAGGGAAAGGCGCAGGATACGCTGAAAGATGCAGAGGGCTTGAGGAGTAAGAGAAAAAG
TGGGATGGAGCTTAACGACCATAATGCGCATGCTCAGAGTGATGGAAAGGAAAAGAATGCTCGT
GCTAATGAACCTGACAGTGCAGACATTTTACAAGTTACAAACACCGATGATGACGATGAGGTGG
GGCCAGAAAATCATAGGGAGAACTTCAATAACAATAACAATAACAATTCTGTAGCTGTCTCATC
CTTGAATAATGGCAGGCAGCAGACATCTATTTCAGAATATCCTCATGTACTACAGACAGCCAGT
GAAGCAAACTATTACACAAATGAATACCAAATTAAAAAGTTTAACAATGCCTCTAGAATCTCAG
AGTTACTGGGTATATTTGAGTCTCAAAAGTCGTCCTCCAAGAATGTCCTAGCCTTGGCTCTGGA
GAGCACGGCTGACAGAGGGACTGCAGGCAGTCCCATGCAGCTGGCACTGGAGCCCGGCTTCCAG
CAGGGCTTATCAGTTAAAGGGGAAAGCCTTGCAGTCTCTAACGAAGTAAACCCCTTACACATTA
AAGGAAACCATGAAAATAACAAGAATGTACACCTTTTCTTCTCTAACACTGTGAAAATCACTTC
TTTTTCCAAGAAACATAACATCCTTGGGTGTGATTTAATAGATTCTGTTGATCAACTTAAAAAT
ATGTCATGCTTGTATTTAAGAGAACTCGGGAAAAATGTCAAATGCTGGCATGGTGAAACTGCAG
GAGCGGCTCGGCATGGTGGAAAAATGTGTTTTGATGCTCAGAGCCAAGAGAGTGCGGCTAAGCC
TGTGTTTCCCAGCATGCAGTGCCAGGCTCAACATCTGACTGTGGAAGAGCAGATTAAACGGGAC
AGGTGCTACAGCGACAGTGAGGCTGACTGAAAAGTCTTTGGCCACTTGCAGTTCATGCTCGGGC
ACTGAGGGAGAATGTTCTCGGAGAAGACCTCGGGATCATCGCTAACCTTTTGATGAGTTTGTAA
AGATCACGTTTCATAATCTCACCATTCACAGCACATTATTTCTTGTATCGCACTCCATAATTCT
TTTCCACCATTCACTTGAGACTAGTTTGGATCTTAATGAAATGCTGAGATGAAACATGGTGACC
GTGTTTTCTTCTCAAATGGCGCATGGGCTACGGTTTTCTGTATCTTAAAGTGGGAGAGAGTCTG
CACCGCTGGTGTTCATCGCCACTCTTATACCTTCTCTATATTTTCTGATGAAATAAAATTTTGT
CAACTGAGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591688 ⟹ XP_017447177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	72,534,175 - 72,621,056 (+)	NCBI
mRatBN7.2	3	52,126,213 - 52,213,094 (+)	NCBI
Rnor_6.0	3	53,563,207 - 53,658,113 (+)	NCBI

Sequence:

show sequence

AGCAGCGCTGTCTACTTGCTTCATAGACTCTTCGGTGGAGCTGGTCTCCACTCTGCTGGTTGCT
TTCAGGGGACTGGGAAACTTGCTGTATCTCAAACAGGGAGGAACCTTCCGAGTGAAGAGTTGCA
AATCCATAGAGCATTTCTACGGAGATAGGGTCAATTCTGGTACAAAGAGACCTTCAACCTTACT
AAGCCGGGAGACGTGAGTACTGCTGGGACTGAGGACCAGTCGGATCTCCTAGAGGCGCTGTCCC
TGAAGGAGAGGATGGCTAGGTACCAGGCAGCTGTTTCACGGGGCGACACCCGCAGCTTCTCGGC
TAATGTCGTGGAAGAATCAGACTTGTGCACCGTGCCTGGTGGTTTAGCCAAGATGAAGAGACAA
TTTGAAAAGGATGAAATGACTTCAACCTGCAATGCCTTCTCTGAGTATCAATACCAACATGAGA
GCAGATCTGAGCAGGAGGCAATCCACAACAGGCAAGAAATAAGAAGGAATGAAGAAGAAGTTTC
TAAAGGACACAGAACTGATGTCTTCAAAGCTGAAATGATGTCACATCTTGAAAAGCACACGGAG
GAAACAAACCAAGCTTCACAGTTTCGTCAATATGTTCAAGAAACAGTCATTGATACACCAGAAG
ACGAAGAGATTCCTAAGGTTTCCACTAAGATTTTAAAAGAGCAATTTGAAAAGACTGCCCAGGA
AAACTTCCTCTACTCTGATAAAGAAACAACAACCCCAGCCAAGTGTATAAAGATTGAAAATGAC
AGTGAAGAAACCTTAAAGCCATCATCGGCTATGGGTACCTCTTCTTATACTTCAGCCAGGCAAA
GCAAGGAAACTTCAACCTCAAGTTATAGTAATCACAGTCTGACTTCAACAATCCTGGCACAAGA
AAAGGGCACTCCTTCAGGAAAGATGGAAGAATTTCCTCCTCCCCCACCTGATGTTTTTCAAACA
CCAATGGATGTGACAGCATTTTCCCAGTCCCCTGAATTCCCCAGCCCTCCTAGAAGACTGCCAA
TGCCCAGAGATGTATATTCCAAGCAACGAAATTTGTATGAATTAAACCGTTTATATAGGCATAT
CCATCCTGAGTTAAGAAAAAACTTAGAAAAAGATTATATCAGTGAGGTTTCTGAAATTGTTTCT
AGTCACATAAACTCAGGGAACTCGATATCAGCAGGTGTACAACAAGCTCGGTATGTTTTCGAAA
ATACGAATGACAGTTCTCAGAAAGATTTGAGCTCAGAAAGAGAAAACCTGGAGTGGGATGAAAT
TCTGAAAGGAGAGGTGCAGTCAATTCGATGGATTTTTGAGAATCAGCCATTAGATTCTATCAAC
CAAGGTTTTACAGATGAAGCGTACACTTCCAAAGGCATTGCTGACCAAGAACTCATTGCTGGGG
GTGACGTGAAATATACGACTTGGATGTTTGAAACTCAGCCAATAGATGCATTGGGAGTTCCTTC
TGCTGGCACTGAAGAAAACACTGAGAAAATTCCTGAGCTAGCTAAAGGAGATGTTTGCACAGCA
AGGTGGATGTTTGAAACAAGGCCTTTAGACTCAATGAACAAAATGCATGAATGGGAAGATGAAA
CGGCATCTACTTTTATAAAGGACATAACTGGGGGAGATGTCAAGACTGTGAGATACATGTTTGA
AACTCAACAACTGGATCAACTTGGACAGCTTCACTCAGTGGATGAAATGAACTTATTACAACTC
AGATCAGAGCTCAAAGAAATTAAAGGAAATGTTAAGAGAAGCATAAAATGTTTCGAAACTCAAC
CACTGTATGTCATTAGAGATGGTTCAGGCCAAATGCTAGAAATTAAAACTGTGCAGAGAGAAGA
CATTGAAAAGGGAGATGTAAGGACAGCACGCTGGATGTTTGAAACGCAGCCTTTGGACACAATA
AAACAAGACATCACGGAAATTAAAGTTGTTCGAGGAATATCCATGGAGGAAAATGTCAAAGGCG
AGGTGGGTAGAGCAAGGTGGTTATTTGAAACTCAACCACTGGAGAAAATCAAAGAAGAGTCAGG
TGAGGCTGTCCTGAAAACAGAAGCAGTTGTAGGGATAGATGTGTCTAAAAAGTGTTGGATGTTT
GAAACGCAGCCATTAGACACTCTAAAACAATCTCCTGATACAGAGAGTGTATCACCTGAAGAGA
GGATAGGAGGTGACGTAAAAACCACCAAACATCTGTTTGAAACACTCCCAATAGAGGCCTTAAA
AGACAGCCCAGATGTTGGAAAGCTTCAAAAAATCACTGCCTCTGAGGAAGAAAAGGGCGATGTT
AAGCACCAAAAATGGGTTTTTGAAACTCAACGTTTAGAAGATATTAGAGAAGATAAGAAGGAAT
ATACCCAGACAGTGAAGCTAGAAGCAGTGGACAGAGGGCATGTGAAGAACTATACACATATCTT
CGAATCCAATAATCTAATTAAGGTTGATGCATCACATCAAATTGAGGTGGAAGGAGTCACAAGA
GGCACTGTGGAGTTGAATAAATCTCTCTTTGAGACAACCCCACTGTATGCCATTCAAGACCATC
TTGGAAAATACCACCAAGTAAAGACAGTCCAGCAAGAAGAAATAGTAAGGGGTGATGTAAGAAG
CTGTAGATGGCTTTTTGAAACAAGGCCCATTGACCAATTTGACGAAAGCCTTCATAAATTTCAG
ATAATTAGAGGAATATCTGCTCAAGAAATACAGGCAGGGAATGTGAAATCAGCTAGGTGGCTGT
TTGAGACCCAACCTCTTGATTCAATTAAATATTTTAGCAACGTGGAAGAAACAGACAGCAAAAC
TGAACAGAGTACTGATATTGTTAAGGGGGATGTCAAAACCTGTAAATGGCTATTTGAAACCCAG
CCAATGGAGTCTCTTTATGAAAAAGCTTCCTTGATGACGAACTCAGAAGATATTCACAAAGGTG
ATGTTAGAACTTGTATGTGGCTATTTGAAACTCAGCCACTTGATGCCATAAGAAATGACTCTGA
AGCCACAGTAAAACTGCAAACTGTGAAACAGGAGGAGATACAAGGTGGGGATGTCCGGACAGCA
TGTCTTCTTTTTGAGACAGAAAATCTGGACAACATACAGGGCGGTGAAGGGAAAGAAACGAAGC
CCGTGGAGATGGATATAGAATCTGGGGATGTCTCTGGCATGAAGTATAAGTTTGAAAATCAGTC
CTTAGACTCTATAAGTTGCAGTTCGGAGAATGTTTTGAATAAGATCAAAACCCTAAAAATCGAA
GACATTCAGAAAGGCAATGTTTTAAATTGTAGGTGGCTATTTGAAAATCAACCTATCGATATGA
TAAAAGAAAATCAAGAAGGTGATGGATTGGTTAAGACAGTGACAGACATACAGGGTGGAGATGT
GAGAAAGGGATGCTTCATTTTTGAGACGTTTTCTTTAGATGAGATTAAAGATGAATCTGATGTC
ATCAGCACCAGACAAACAAATACCGAGGAAGTAATAAAAGGTGATGTAAAAAGCTACAAGATGC
TTTTTGAAACACAACCACTCTATGCGATTCAAGACCAAGAAGGGTTTTATCATGAAGTGACAAC
AGTTAAAAAAGAAGAAACTATTCATGGAGATGTACGAGGAACAAGGTGGCTCTTTGAAACAAAA
CCGTTAGACTCAATTAACGCATCAGAAGATGTATACATTATTAAATCTGTCACTCAGGAAGACA
TTCAGAAGGGGGATGTGAGTTCTGTCAGATACCGATTTGAAACACAACCACTGGATATGATTTC
AGACAAATCACATAATATTATGCCCACTATTGACCATATTCAAGGAGGCAATGTGCAGATGAAT
AAACAACTATTCGAGTCTGAAGGTGGTGACAAGAAGAATTATGTAAGAACAGTGAGCATCAATG
AAATACAAAAGGGCAATGTTAAGACTTCTACTTGGCTCTTTGAAACTCACAGCATAGATGAGCT
GGGAGAAGTGTCCACCTATGAAAATATCAAGACAGTCACCCAGGAAGACGTGCAGAAAGGTGAC
GTGAAGCAAGCAGTGTGGCTTTTTGAAAATCAGACATTGGATTCCATTAAGGAACTTGATGAAA
GTGACACCAAAATAACCAAAGAAGAAATTCCTCCGTCAGATGTCAAGACAACAACGTGGCTCTT
TGAAACGACACCTATTCACGAATTTAATGAAACTAGAATAGAAAAGGAAGAAATTATTGGTAAA
AGCATTAAAGAAACCTTGGAAGACCTCTACTCTCAAAGAGTGGTTGAAGCTCCCGGAATCATCA
TTGAAGCTGATGAAGTTGGGGATGTCAGAATGGCCAAATACAAGCTCATGAACCAAAGGACTCC
TGAGATCCAGAAGGAAGAAGTTATCAGAGCTGACCTTGGAAACATAATGATGAACTTGCTTTCC
CAAAGAGACTGCACAAAAAAGGAGATATTTATCAGTGAAGAGGAGAAGGGAAATGTCAATTTTA
CTAAAACCCAGTTATTAAACAGATCAATGGAATTCCATGCTGAAAAGGAAGAGATAGTAAGAGG
GGATGTAAAACAAGCAATCCAAAAGCTGTTCTCTGAGGAAAGGTGTGCAAAGAGAGGCATATTA
ATTCAAGAAGATGAAAAGGGAGATGTTAACATGACTATCTATTGTCTTCTTCATGAGAATGCTG
GCGACAAGACTAAGCGTGAAGACATACTGGGAGGTGATGTGAGGCGCACTATTCATAACCTGTT
GTCTTCCGCATCAAATGATAAAATATCTGAAAGGACAAAAATCGATGCATCGGAGAGGGGAAAT
GTTCAGTTCTTCACAACATGCATAGAAACTGGAGCTTTGGATTACCTCAAGCAACTCCAAACAG
GGTCAAATGAAACACTCACAGCTAGAAAGCAAGAAGGGGAGGAAGAAATAATTGGTGGTGATGT
TGAGGGAACAAAATTCTTACTAAAGAAAAGACAGTCTTCTATTGAACGCACTGTTAGTGAAACT
GATATCATCCCAGGAGATGTGCGTAATACAGTTAAAGTCTTCATGACGGAGCCCCAGAGTGCAT
CTTTTAAGACAGCGAAAGAAGAGATTGTAAAAGGTGATTTGAAATCAACCCTGAATTCTCTCAA
CCAGGCCATGAATCAGAAAGTAGTGGCTAAAACAGAAGATATTATGAAAGATGACAAGGCAGCT
ATACTCAAGTCACTTAAGGAGTCAGGTGGCAGACAGAAAGAACATAAACAATCTGCTAGCATCT
CTAGTGATATTGGGCAAGCTATTGAGTGCCTTGAAAAGGCCACAAATACAAGGACAGAAATATT
GAAAAAGGAGCTGATATTAGATGATCTTAAAACATCATTAAGGTCTTTGAAAGAAGAACAATAC
AGTTTCAAAGAGGTTGGTAAACAGGGAATGGTCAAAGATGTACTAGGATTCTCAGAGAGACAAG
AACTAGGGATTCATCCAGCAGCTGTCCAGAGAGAGAAAAAAAGCCTTCTTCAACCAGTGCCAGG
ACCATGTGAGCCAGCAATCAGGCAGCAAGCAGGACCAGGCCCTCTTGATGAAGCTACACAGAAA
TCCTGCCATCGGTCTTTAACAGAAGAAAGAACTGAGGCTAATCTTCCCAAAGCCCCTAAGGGCA
CTGTAAAGATTGTCATTGATCGAGAACAAAACAACGATGCTCTTGAGAAAAGCCTTAGGAAAAT
GTCTAATTCAGAACATAGAGCTATGAAAAATGTTTTAGACATGGGTGACAGAAGGGGTGTCTGG
ACAGAGAGCAAAGAGTGTCTGTGTAGTGACGACCATATGAGCAAATACGTAAGTGCAAGCATGT
CAAGGAAGAAAAGTCTAAAGACCAAGGAATCAGAGAATGTGAGAGAATCGAAGGACGATGTGAG
CTCCACCCAGTCTGTGGATAAAACATTTAGGAAGCAACAGACTCAAAACTGTGAACTGGGGAAG
GATCACCAGAAGTCTCAGTTCCAGGATTCCTATGCGAAGAATCAGAAAAATACCCAAAACATTA
GTATGTCAGCAGAAACCCAAAGTTACAGACCAGACCCTACCCAACATCCAGTCAGCAATCCAGC
TGGAGAAACGCTTGAGATGACAAGGGACTTTCAGAAGCAAGCCTTGATAAGACAGGAAAAGCAG
AATTCTAATAAAGATATGAGGAAAAATGACATGGGCCTTCAACCTCTGCCTGTAGGGAAGGACG
CACACAGTGCACCAGGAGTGACAGTCTCTGGGAAAAACCACAAAAGAACTCAGGCACCTGACAA
GAAACAGAGAATTGATGTTTGTCTAGAAAGCCAGGACTTTCTAATGAAGACAAATACTTCCAAG
GAGTTAAAAATGGCAATGGAGAGGTCCTTTAATCCAGTCAACCTTTACCCTGACTGTGGTGTAA
AAGAAAATGAGGACGCCCTTCCTCCTCCATCTCCCCCTCCTCCTCCTCCTTCCAATGCGTCATC
TGAAATTGAATTTCCTCTCCCTCCTCCACCACCTATAATGCTGTTGCCTGAAAAAAATGAGTTT
CCTCCCTCATCACCCACAGAGAAGTCAAGGGCTGAACTTGAGAGCCTCCCAACCCTGCCTCTTC
CTCCACCACCAGGAGATGAGAAATCTGATCAGGAATGTCTACCAACATCCCTACCTCCTCCCCC
TCCCACAGCTCCATCCCAACCAGCACATCTTCTTTCCTCCTCTGTTTTAGAACATCACAGTGAA
GCATTTTTACAACAGTATTCCCGAAAAGAAACCTTGGACTCTCATCAGCTTCACTCACAGGCTA
AAATCCTAACAGGAAAATCACCACCCCCAACACTCCCCAAACCCAAACTTCCCGAGAGAATCAA
AGCTAAGATGAGCCAGGATTCACCAAGCGGTGAATTGGAAAGATCTCTGTCAGATGTGGAAATT
AAAACTACCCTCTCAAAGGATCAGAAAAGTTCGCTGGTGGCAGAAAGCCGTGAGCACACAGAGG
CCAAGCAAGAAGTATTCCGAAAAAGCCTTGGAAGAAAACAGCTGTCAATTAGCTCTGCAAACTC
CCTCTCTCAGACAGTTCCAGAAATCCCAGCACCCAAGGAAAAACAGACAGCACCCCTTGTTAAA
TCTCACTCATTCCCATCAGGTTCAGAACAACAAAGTCCTAAGCCTTACATGAGAAAATTTAAGA
CACCCTTAATGATTGCGGAAGAAAAATACAGACAGCAAAGGGAAGAGCTTGAGAAACAGAGACG
GGAGAGTTCTTGCCATAGCATCATCAAAACAGAAACCCAGCACCGCAGCTTATCAGAGAAAGAG
AAAGAAACAGAGTTACAAAAAGCAGCTGAGGCAATGTCCACTCCCAGAAAGGATTCAGACTTCA
CTAGGGCACAGCCCAACCTGGAACCTAAAAGCAAGGCTGTGATCGCCAGTGAATGCTCTGAAAG
CCAGCTCTCTACAGCTTCCACATTGACAGTCGCTACCGAGAGGCTCCAGCATGTTCTAGCCGCT
TCAGACGATAAGCTTACCCTGCGACGGGAAGGCACACAGAACTCAAGTGACACCCTACAATCGA
AAACAGCTTGTGAGATTAACCAGAGTCACAAGGAATGTAGGACAGAGCAAACATTTGAGCAACA
CGTGGAGAAGTTGCCCTTCCCCCAAACCAAACCCATTTCCCCGAGTTTCAAAGTGAAAACTATC
AGGCTTCCAGCTCTAGATCATACGCTGACTGAAACAGATCTCAGTTCTGAACGCCGCGTAAAGC
AATCCGAAATTGACGTTCAAACCAGTACTAAAGAAATGAATAAGGAAATTAAGAAAACCGAAGT
GAGCACACAGTGTGATAATAAGCAATCTGTGGCTGAAAAATATTTTCAATTACCTAAAACAGAG
AAACGGGTGACGGTACAAATGCCCAAAGACTATGCAGCGAAAAGTCATCAAAGCAAACTCCAAA
CAGTTCCCAAGAAGCATGGAGGATTGGGGGAGTTTGACAGAGGGAATGTCCTGGGGAGGGAAGG
AAAAAATCAGGACTCCTCCATGAGCAGTACAAAAGAAAGCAGGGTAATAGTTGAAAGAAAGCAA
GAACATCTACAGGACCAGAGCGTACCAAGGTTAGTCCAACAAAAGATTATCGGTGAAAGCCTGG
ACTCACGGGTTCAGAATTTTCAGCAGACACAAACACAAACTTCTAGGATTGAGCATAAAGAACT
GTCCCAACCTTACAGTGAGAAAAAATGTCTTAGAGACAAGGACAAACAACAAAAACAGGTCTCC
TCTAACACTGACGATTCAAAGCAAGAGATAACACAAAAACAATCTTCATTTTCCTCTGTGAGAG
AATCCCAGCAGGATGGAGAAAAATGTGCCATAAATATATTGGAATTCTTGAGAAAACGTGAAGA
ACTACAGCAGATTTTGTCTAGGGTAAAACAGTTTGAAGCAGATTCAAATAAAAGTGGCCTTAAA
ACATTTCAGACACTGTTAAATATTGCTCCGGTGTGGCTGATAAGTGAGGAGAAAAGAGAATATG
GAGTTCGTGTTGCCATGGAGAATAATTTAGAAAAAGTCAAAGAAGAAATAATACATATTAAAAC
TCAAGCGGAGGAGATGCTCGTTCACTGTGAACACGTAATTCGAACAGCCATGATGGCTTCCCAA
ACAGGAAAGCAGAAAGATAAACCTACCAATCTTAATGAAATGCCACTGAAAGTGTCTAATGTTA
ATCTCAGCTCTCATAAAGGCACTGAACAGAAAGAAAGTAAATTTGTAGAAGAAAAATTAGCAAC
CCGCCAAGTAGCAACCCATTCTGAGGCAGCAACTCATAATCCTGCTAAAACATATCAGGAGGCT
AAGGGGGACGATAGTAAGATGGCTCCTCCCTCTTTGAAAACTCGCCCACCATCACCAACTTTCA
TCACCATAGAATCCACTGCCCGCCGAGCAGAAACATCCACTAAGAGTGAGCTTTCTCAGTCCCC
TAAAAATAACAGTTGTGTTGAACCTCTACCCAGAAGACCCATGGAGCATACATCTAGGCTTCCC
AGAACAAGTACATCACCTTCCCCACCAAGGAGTCGTTCAGAACAACTTGTCAGACTCAAAGACA
CCACGGCCAGGTTAGCCAAAGGCACTATCCCTTGTTCACCAGGAACCCCGGTTCCAGTTGTCGA
GAAGAGATCTGAAGTTGTCATGTCTCCAGCCACACTCCGCAGGCAAATCAAGATAGAAAGCCGT
GGCGGGGACTCCCCACCCACCATCACAATACCTGTGAGTGTAAACCACCATGTCGTCAGTGGTT
CCTTCAGAGAATCAGTAGACGCTCAAGAGGCAGTGAAGAAAACAGAAAAAACAGAGACGTACGT
TCATAAAGACAAAAAGAATTCTGTCAGTAGCGCAATGCCAGAGACTGAAAGCTATGACGCAGTT
GAAATCATCCGCAAGGTGGAAGGGCCCCACCTATCAGAACACAGGGAGAGATTTGAAGCCACCA
ATCAAACTGTTCAAATGGCTGAACATTTTCTGAATGGCCACGAAAATGAAGTAAACAGATGGTT
TAGGGAATTTGAGAATGGCCCAGTTTTCGGAGCAAAGACAGAGAGAAGAGCTTATGCAAATGGC
GAAATAAACCACAACATGAAACAAGAGAGTCATACGTTTTGCAAGGAGGAATTTGGATTAGAAT
CTTCTGAAACTGCTAATTTTACAGGCTTTTCTTACAGACATCCTAGAGAGCATCGAGCAAAAGC
CCCTGCAACGCAGCCCAGGGTTCACTCTGAAGCCAGAGCTCTCAATGAGCATTTTTTGAGCGTG
GATGCGTTCGACAGTCAGATTGTAGAGTCACAGGTAGCAACCTCATCATCACGGAGCTCAGAGG
CAGGCAGATCTGGATTTGATTTTAAGCATGCCCCACCGACCTATGAAGATGTCATCGCTGGCCA
CATCCTAGATATTGCAGATTCGCCTACAAACCTCAGACGGAATTTTCAAAAGACATGGCAGGAG
AGTGAAAGAGTTTTTAAGAGCGTGGGATATGAAACCTCGGATGCACATGCGACAGAAATGAGCA
GGGCCTTCCAGGAGGAATCGGCCTTTTTGAGTGACAAGGAAATCTGCATAATTTGTCAAAAGAC
GGTTTATCCAATGGAGTGCCTCGTAGCAGACCAGCAGAATTTTCATAAATCTTGCTTCAGATGC
CACCATTGCAGCAGTAAACTGAGTTTGGGAAATTACGCATCACTTCACGGACAAATATACTGCA
AGCCTCACTTTAAACAACTTTTCAAGTCTAAAGGAAATTATGATGAAGGTTTTGGACACAAGCA
ACATAAAGACCGGTGGAATTGCAAAAACCAAAGCAGCTTAGTTGATTCTATTCCCAGCGGAGAG
CCCGATGCTCGGGAAAACCCTACAGCAGATATCCTCTTGCTTGGGGATCTTGCTGTACATGCAG
ACGCTTGTAACAGCAAGCGGCAAGACAATGGTTTGAGAAAATGGGGGGAGAGGGGGAAATTAAA
AATTGTTTGGCCTCCCTGTCAGGAGATGCCTAAGAAAAACTCTCCCCCTGAGGAAGAACTCAAA
GTGAATAAAGCTAAATGGCCACCTGAGTTGACCATCCCTGTTCCCTCAGAATTTAAAAGGGAGT
CACTGACCGAACACGTGAAAATGTTGGAGAGTCAGGGGCAAGAACAAGATCACCTCCCTGACTT
GCAACCCTGCCAACGCATTTGTCAGAAAGAGGACATTACAGGCATCAAAGAAATAAAAGGGTAC
GAAGAAAGAAATGATGAGAAAGAAGCAAAGGGAAAGGCGCAGGATACGCTGAAAGATGCAGAGG
GCTTGAGGAGTAAGAGAAAAAGTGGGATGGAGCTTAACGACCATAATGCGCATGCTCAGAGTGA
TGGAAAGGAAAAGAATGCTCGTGCTAATGAACCTGACAGTGCAGACATTTTACAAGTTACAAAC
ACCGATGATGACGATGAGGTGGGGCCAGAAAATCATAGGGAGAACTTCAATAACAATAACAATA
ACAATTCTGTAGCTGTCTCATCCTTGAATAATGGCAGGCAGCAGACATCTATTTCAGAATATCC
TCATGTACTACAGACAGCCAGTGAAGCAAACTATTACACAAATGAATACCAAATTAAAAAGTTT
AACAATGCCTCTAGAATCTCAGAGTTACTGGGTATATTTGAGTCTCAAAAGTCGTCCTCCAAGA
ATGTCCTAGCCTTGGCTCTGGAGGGCAAGGCTGACAGAGGGACTGCAGGCAGTCCCATGCAGCT
GGCACTGGAGCCCGGCTTCCAGCAGGGCTTATCAGTTAAAGGGGAAAGCCTTGCAGTCTCTAAC
GAAGTAAACCCCTTACACATTAAAGGAAACCATGAAAATAACAAGAATGTACACCTTTTCTTCT
CTAACACTGTGAAAATCACTTCTTTTTCCAAGAAACATAACATCCTTGGGTGTGATTTAATAGA
TTCTGTTGATCAACTTAAAAATATGTCATGCTTGTATTTAAGAGAACTCGGGAAAAATGTCAAA
TGCTGGCATGGTGAAACTGCAGGAGCGGCTCGGCATGGTGGAAAAATGTGTTTTGATGCTCAGA
GCCAAGAGAGTGCGGCTAAGCCTGTGTTTCCCAGCATGCAGTGCCAGGCTCAACATCTGACTGT
GGAAGAGCAGATTAAACGGGACAGGTGCTACAGCGACAGTGAGGCTGACTGAAAAGTCTTTGGC
CACTTGCAGTTCATGCTCGGGCACTGAGGGAGAATGTTCTCGGAGAAGACCTCGGGATCATCGC
TAACCTTTTGATGAGTTTGTAAAGATCACGTTTCATAATCTCACCCTTCACAGCACATTATTTC
TTGTATCGCACTCCATAATTCTTTTCCACCATTCACTTGAGACTAGTTTGGATCTTAATGAAAT
GCTGAGATGAAACATGGTGACCGTGTTTTCTTCTCAAATGGCGCATGGGCTACGGTTTTCTGTA
TCTTAAAGTGGGAGAGAGTCTGCACCGCTGGTGTTCATCGCCACTCTTATACCTTCTCTATATT
TTCTGATGAAATAAAATTTTGTCAACTGAGATGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_973718	(Get FASTA)	NCBI Sequence Viewer
	XP_017447177	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ05020	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048045
GenBank Protein	Q71LX6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_973718 ⟸ NM_201989

- UniProtKB:

Q71LX6 (UniProtKB/Swiss-Prot), A0A8I6ABN9 (UniProtKB/TrEMBL), F1LMC2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARYQAAVSRGDTRSFSANVMEESDLCTVPGGLAKMKRQFEKDEMTSTCNAFSEYQYQHESRSE
QEAIHNRQEIRRNEEEVSKGHRTDVFKAEMMSHLEKHTEETNQASQFRQYVQETVIDTPEDEEI
PKVSTKILKEQFEKTAQENFLYSDKETTTPAKCIKIENDSEETLKPSSAMGTSSYTSARQSKET
STSSYSNHSLTSTILAQEKGTPSGKMEEFPPPPPDVFQTPMDVTAFSQSPEFPSPPRRLPMPRD
VYSKQRNLYELNRLYRHIHPELRKNLEKDYISEVSEIVSSHINSGNSISAGVQQARYVFENTND
SSQKDLSSERENLEWDEILKGEVQSIRWIFENQPLDSINQGFTDEAYTSKGIADQELIAGGDVK
YTTWMFETQPIDALGVPSAGTEENTEKIPELAKGDVCTARWMFETRPLDSMNKMHEWEDETAST
FIKDITGGDVKTVRYMFETQQLDQLGQLHSVDEMNLLQLRSELKEIKGNVKRSIKCFETQPLYV
IRDGSGQMLEIKTVQREDIEKGDVRTARWMFETQPLDTIKQDITEIKVVRGISMEENVKGEVGR
ARWLFETQPLEKIKEESGEAVLKTEAVVGIDVSKKCWMFETQPLDTLKQSPDTESVSPEERIGG
DVKTTKHLLETLPIEALKDSPDVGKLQKITASEEEKGDVKHQKWVFETQRLEDIREDKKEYTQT
VKLEAVDRGHVKNYTHIFESNNLIKVDASHQIEVEGVTRGTVELNKSLFETTPLYAIQDHLGKY
HQVKTVQQEEIVRGDVRSCRWLFETRPIDQFDESLHKFQIIRGISAQEIQAGNVKSARWLFETQ
PLDSIKYFSNVEETDSKTEQSTDIVKGDVKTCKWLFETQPMESLYEKASLMTNSEDIHKGDVRT
CMWLFETQPLDAIKNDSEATVKLQTVKQEEIQGGDVRTACLLFETENLDNIQGGEGKETKPVEM
DIESGDVSGMKYKFENQSLDSISCSSENVLNKIKTLKIEDIQKGNVLNCRWLFENQPIDMIKEN
QEGDGLVKTVTDIQGGDVRKGCFIFETFSLDEIKDESDVISTRQTNTEEVIKGDVKSYKMLFET
QPLYAIQDQEGFYHEVTTVKKEETIHGDVRGTRWLFETKPLDSINASEDVYIIKSVTQEDIQKG
DVSSVRYRFETQPLDMISDKSHNIMPTIDHIQGGNVQMNKQLFESEGGDKKNYVRTVSINEIQK
GNVKTSTWLFETHSIDELGEVSTYENIKTVTQEDVQKGDVKQAVWLFENQTLDSIKELDESDTK
ITKEEIPPSDVKTTTWLFETTPIHEFNETRIEKEEIIGKSIKETLEDLYSQRVVEAPGIIIEAD
EVGDVRMAKYKLMNQRTPEIQKEEVIRADLGNIMMNLLSQRDCTKKEIFISEEEKGNVNFTKTQ
LLNRSMEFHAEKEEIVRGDVKQAIQKLFSEERCAKRGILIQEDEKGDVNMTIYCLLHENAGDKT
KREDILGGDVRRTIHNLLSSASNDKISERTKIDASERGNVQFFTTCIETGALDYLKQLQTGSNE
TLTARKQEGEEEIIGGDVEGTKFLLKKRQSSIERTVSETDIIPGDVRNTVKVFMTEPQSASFKT
AKEEIVKGDLKSTLNSLNQAMNQKVVAKTEDIMKDDKAAILKSLKESGGRQKEHKQSASISSDI
GQAIECLEKATNTRTEILKKELILDDLKTSLRSLKEEQYSFKEVGKQGMVKDVLGFSERQELGI
HPAAVQREKKSLLQPVPGPCEPAIRQQAGPGPLDEATQKSCHRSLTEERTEANLPKAPKGTVKI
VIDREQNNDALEKSLRKMSNSEHRAMKNVLDMGDRRGVWTESKECLCSDDHMSKYVSASMSRKK
SLKTKESENVRESKDDVSSTQSVDKTFRKQQTQNCELGKDHQKSQFQDSYAKNQKNTQNISMSA
ETQSYRPDPTQHPVSNPAGETLEMTRDFQKQALIRQEKQNSNKDMRKNDMGLQPLPVGKDAHSA
PGVTVSGKNHKRTQAPDKKQRIDVCLESQDFLMKTNTSKELKMAMERSFNPVNLYPDCGVKENE
DALPPPSPPPPPPSNASSEIEFPLPPPPPIMLLPEKNEFPPSSPTEKSRAELESLPTLPLPPPP
GDEKSDQECLPTSLPPPPPTAPSQPAHLLSSSVLEHHSEAFLQQYSRKETLDSHQLHSQAKILT
GKSPPPTLPKPKLPERIKAKMSQDSPSGELERSLSDVEIKTTLSKDQKSSLVAESREHTEAKQE
VFRKSLGRKQLSISSANSLSQTVPEIPAPKEKQTAPLVKSHSFPSGSEQQSPKPYMRKFKTPLM
IAEEKYRQQREELEKQRRESSCHSIIKTETQHRSLSEKEKETELQKAAEAMSTPRKDSDFTRAQ
PNLEPKSKAVIASECSESQLSTASALTVATERLQHVLAASDDKLTLRREGTQNSSDTLQSKTAC
EINQSHKECRTEQTFEQHVEKLPFPQTKPISPSFKVKTIRLPALDHTLTETDLSSERRVKQSEI
DVQTSTKEMNKEIKKTEVSTQCDNKQSVAEKYFQLPKTEKRVTVQMPKDYAAKSHQSKLQTVPK
KHGGLGEFDRGNVLGREGKNQDSSMSSTKESRVIVERKQEHLQDQSVPRLVQQKIIGESLDSRV
QNFQQTQTQTSRIEHKELSQPYSEKKCLRDKDKQQKQVSSNTDDSKQEITQKQSSFSSVRESQQ
DGEKCAINILEFLRKREELQQILSRVKQFEADSNKSGLKTFQTLLNIAPVWLISEEKREYGVRV
AMENNLEKVKEEIIHIKTQAEEMLVHCEHVIRTAMMASQTGKQKDKPTNLNEMPLKVSNVNLSS
HKGTEQKESKIVEEKLASRQVATHSEAATHNPAKTYQEAKGDDSKMAPPSLKTRPPSPTFITIE
STARRAETSTKSELSQSPKNNSCVEPLPRRPMEHTSRLPRTSTSPSPPRSRSEQLVRLKDTTAR
LAKGTIPCSPGTPVPVVEKRSEVVMSPATLRRQIKIESRGGDSPPTITIPVSVNHHVVSGSFRE
SVDAQEAVKKTEKTETYVHKDKKNSVSSAMPETESYDAVEIIRKVEGPHLSEHRERFEATNQTV
QMAEHFLNGHENEVNRWFREFENGPVFGAKTERRAYANGEINHNMKQESHTFCKEEFGLESSET
ANFTGFSYRHPREHRAKAPATQPRVHSEARALNEHFLSVDAFDSQIVESQVATSSSRSSEAGRS
GFDFKHAPPTYEDVIAGHILDIADSPTNLRRNFQKTWQESERVFKSVGYETSDAHATEMSRAFQ
EELAFLSETVGPRQGNLHNLSKDGLSNGVPRSRPAEFS

hide sequence

RefSeq Acc Id:	XP_017447177 ⟸ XM_017591688
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARYQAAVSRGDTRSFSANVVEESDLCTVPGGLAKMKRQFEKDEMTSTCNAFSEYQYQHESRSE QEAIHNRQEIRRNEEEVSKGHRTDVFKAEMMSHLEKHTEETNQASQFRQYVQETVIDTPEDEEI PKVSTKILKEQFEKTAQENFLYSDKETTTPAKCIKIENDSEETLKPSSAMGTSSYTSARQSKET STSSYSNHSLTSTILAQEKGTPSGKMEEFPPPPPDVFQTPMDVTAFSQSPEFPSPPRRLPMPRD VYSKQRNLYELNRLYRHIHPELRKNLEKDYISEVSEIVSSHINSGNSISAGVQQARYVFENTND SSQKDLSSERENLEWDEILKGEVQSIRWIFENQPLDSINQGFTDEAYTSKGIADQELIAGGDVK YTTWMFETQPIDALGVPSAGTEENTEKIPELAKGDVCTARWMFETRPLDSMNKMHEWEDETAST FIKDITGGDVKTVRYMFETQQLDQLGQLHSVDEMNLLQLRSELKEIKGNVKRSIKCFETQPLYV IRDGSGQMLEIKTVQREDIEKGDVRTARWMFETQPLDTIKQDITEIKVVRGISMEENVKGEVGR ARWLFETQPLEKIKEESGEAVLKTEAVVGIDVSKKCWMFETQPLDTLKQSPDTESVSPEERIGG DVKTTKHLFETLPIEALKDSPDVGKLQKITASEEEKGDVKHQKWVFETQRLEDIREDKKEYTQT VKLEAVDRGHVKNYTHIFESNNLIKVDASHQIEVEGVTRGTVELNKSLFETTPLYAIQDHLGKY HQVKTVQQEEIVRGDVRSCRWLFETRPIDQFDESLHKFQIIRGISAQEIQAGNVKSARWLFETQ PLDSIKYFSNVEETDSKTEQSTDIVKGDVKTCKWLFETQPMESLYEKASLMTNSEDIHKGDVRT CMWLFETQPLDAIRNDSEATVKLQTVKQEEIQGGDVRTACLLFETENLDNIQGGEGKETKPVEM DIESGDVSGMKYKFENQSLDSISCSSENVLNKIKTLKIEDIQKGNVLNCRWLFENQPIDMIKEN QEGDGLVKTVTDIQGGDVRKGCFIFETFSLDEIKDESDVISTRQTNTEEVIKGDVKSYKMLFET QPLYAIQDQEGFYHEVTTVKKEETIHGDVRGTRWLFETKPLDSINASEDVYIIKSVTQEDIQKG DVSSVRYRFETQPLDMISDKSHNIMPTIDHIQGGNVQMNKQLFESEGGDKKNYVRTVSINEIQK GNVKTSTWLFETHSIDELGEVSTYENIKTVTQEDVQKGDVKQAVWLFENQTLDSIKELDESDTK ITKEEIPPSDVKTTTWLFETTPIHEFNETRIEKEEIIGKSIKETLEDLYSQRVVEAPGIIIEAD EVGDVRMAKYKLMNQRTPEIQKEEVIRADLGNIMMNLLSQRDCTKKEIFISEEEKGNVNFTKTQ LLNRSMEFHAEKEEIVRGDVKQAIQKLFSEERCAKRGILIQEDEKGDVNMTIYCLLHENAGDKT KREDILGGDVRRTIHNLLSSASNDKISERTKIDASERGNVQFFTTCIETGALDYLKQLQTGSNE TLTARKQEGEEEIIGGDVEGTKFLLKKRQSSIERTVSETDIIPGDVRNTVKVFMTEPQSASFKT AKEEIVKGDLKSTLNSLNQAMNQKVVAKTEDIMKDDKAAILKSLKESGGRQKEHKQSASISSDI GQAIECLEKATNTRTEILKKELILDDLKTSLRSLKEEQYSFKEVGKQGMVKDVLGFSERQELGI HPAAVQREKKSLLQPVPGPCEPAIRQQAGPGPLDEATQKSCHRSLTEERTEANLPKAPKGTVKI VIDREQNNDALEKSLRKMSNSEHRAMKNVLDMGDRRGVWTESKECLCSDDHMSKYVSASMSRKK SLKTKESENVRESKDDVSSTQSVDKTFRKQQTQNCELGKDHQKSQFQDSYAKNQKNTQNISMSA ETQSYRPDPTQHPVSNPAGETLEMTRDFQKQALIRQEKQNSNKDMRKNDMGLQPLPVGKDAHSA PGVTVSGKNHKRTQAPDKKQRIDVCLESQDFLMKTNTSKELKMAMERSFNPVNLYPDCGVKENE DALPPPSPPPPPPSNASSEIEFPLPPPPPIMLLPEKNEFPPSSPTEKSRAELESLPTLPLPPPP GDEKSDQECLPTSLPPPPPTAPSQPAHLLSSSVLEHHSEAFLQQYSRKETLDSHQLHSQAKILT GKSPPPTLPKPKLPERIKAKMSQDSPSGELERSLSDVEIKTTLSKDQKSSLVAESREHTEAKQE VFRKSLGRKQLSISSANSLSQTVPEIPAPKEKQTAPLVKSHSFPSGSEQQSPKPYMRKFKTPLM IAEEKYRQQREELEKQRRESSCHSIIKTETQHRSLSEKEKETELQKAAEAMSTPRKDSDFTRAQ PNLEPKSKAVIASECSESQLSTASTLTVATERLQHVLAASDDKLTLRREGTQNSSDTLQSKTAC EINQSHKECRTEQTFEQHVEKLPFPQTKPISPSFKVKTIRLPALDHTLTETDLSSERRVKQSEI DVQTSTKEMNKEIKKTEVSTQCDNKQSVAEKYFQLPKTEKRVTVQMPKDYAAKSHQSKLQTVPK KHGGLGEFDRGNVLGREGKNQDSSMSSTKESRVIVERKQEHLQDQSVPRLVQQKIIGESLDSRV QNFQQTQTQTSRIEHKELSQPYSEKKCLRDKDKQQKQVSSNTDDSKQEITQKQSSFSSVRESQQ DGEKCAINILEFLRKREELQQILSRVKQFEADSNKSGLKTFQTLLNIAPVWLISEEKREYGVRV AMENNLEKVKEEIIHIKTQAEEMLVHCEHVIRTAMMASQTGKQKDKPTNLNEMPLKVSNVNLSS HKGTEQKESKFVEEKLATRQVATHSEAATHNPAKTYQEAKGDDSKMAPPSLKTRPPSPTFITIE STARRAETSTKSELSQSPKNNSCVEPLPRRPMEHTSRLPRTSTSPSPPRSRSEQLVRLKDTTAR LAKGTIPCSPGTPVPVVEKRSEVVMSPATLRRQIKIESRGGDSPPTITIPVSVNHHVVSGSFRE SVDAQEAVKKTEKTETYVHKDKKNSVSSAMPETESYDAVEIIRKVEGPHLSEHRERFEATNQTV QMAEHFLNGHENEVNRWFREFENGPVFGAKTERRAYANGEINHNMKQESHTFCKEEFGLESSET ANFTGFSYRHPREHRAKAPATQPRVHSEARALNEHFLSVDAFDSQIVESQVATSSSRSSEAGRS GFDFKHAPPTYEDVIAGHILDIADSPTNLRRNFQKTWQESERVFKSVGYETSDAHATEMSRAFQ EESAFLSDKEICIICQKTVYPMECLVADQQNFHKSCFRCHHCSSKLSLGNYASLHGQIYCKPHF KQLFKSKGNYDEGFGHKQHKDRWNCKNQSSLVDSIPSGEPDARENPTADILLLGDLAVHADACN SKRQDNGLRKWGERGKLKIVWPPCQEMPKKNSPPEEELKVNKAKWPPELTIPVPSEFKRESLTE HVKMLESQGQEQDHLPDLQPCQRICQKEDITGIKEIKGYEERNDEKEAKGKAQDTLKDAEGLRS KRKSGMELNDHNAHAQSDGKEKNARANEPDSADILQVTNTDDDDEVGPENHRENFNNNNNNNSV AVSSLNNGRQQTSISEYPHVLQTASEANYYTNEYQIKKFNNASRISELLGIFESQKSSSKNVLA LALEGKADRGTAGSPMQLALEPGFQQGLSVKGESLAVSNEVNPLHIKGNHENNKNVHLFFSNTV KITSFSKKHNILGCDLIDSVDQLKNMSCLYLRELGKNVKCWHGETAGAARHGGKMCFDAQSQES AAKPVFPSMQCQAQHLTVEEQIKRDRCYSDSEAD hide sequence

Ensembl Acc Id:

ENSRNOP00000048045 ⟸ ENSRNOT00000048300

Ensembl Acc Id:

ENSRNOP00000090056 ⟸ ENSRNOT00000101680

Ensembl Acc Id:

ENSRNOP00000079592 ⟸ ENSRNOT00000117778

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692109

Promoter ID:

EPDNEW_R2633

Type:

single initiation site

Name:

Xirp2_1

Description:

xin actin-binding repeat containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	53,563,229 - 53,563,289	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1302980	AgrOrtholog
BioCyc Gene	G2FUF-49527	BioCyc
Ensembl Genes	ENSRNOG00000034258	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000048300	ENTREZGENE
InterPro	Actin-binding_Xin_repeat	UniProtKB/Swiss-Prot
	XIRP1/XIRP2	UniProtKB/Swiss-Prot
KEGG Report	rno:311098	UniProtKB/Swiss-Prot
NCBI Gene	311098	ENTREZGENE
PANTHER	PTHR22591	UniProtKB/Swiss-Prot
	PTHR22591:SF1	UniProtKB/Swiss-Prot
Pfam	Xin	UniProtKB/Swiss-Prot
PhenoGen	Xirp2	PhenoGen
PROSITE	XIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000034258	RatGTEx
UniProt	A0A8I5ZNK6_RAT	UniProtKB/TrEMBL
	A0A8I6ABN9	ENTREZGENE, UniProtKB/TrEMBL
	F1LMC2	ENTREZGENE, UniProtKB/TrEMBL
	Q71LX6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-03	Xirp2	xin actin-binding repeat containing 2	Cmya3	cardiomyopathy associated 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Cmya3	cardiomyopathy associated 3	LACS	L-NAME induced actin cytoskeletal protein	Symbol and Name updated	1299863	APPROVED
2005-02-14	LACS	L-NAME induced actin cytoskeletal protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar