Xirp2 (xin actin-binding repeat containing 2) - Rat Genome Database

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Gene: Xirp2 (xin actin-binding repeat containing 2) Mus musculus
Analyze
Symbol: Xirp2
Name: xin actin-binding repeat containing 2
RGD ID: 1552200
MGI Page MGI
Description: Enables alpha-actinin binding activity. Acts upstream of or within cardiac muscle tissue morphogenesis; cell-cell junction organization; and ventricular septum development. Located in Z disc. Is expressed in heart; inner ear; lung; and skeletal muscle. Human ortholog(s) of this gene implicated in depressive disorder. Orthologous to human XIRP2 (xin actin binding repeat containing 2).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2310003D02Rik; 2310008C07Rik; A530024P18Rik; AI452089; beta-xin; cardiomyopathy associated 3; cardiomyopathy-associated protein 3; Cmya; Cmya3; Gm352; mXinbeta; myogenic MEF2-activated Xin-related protein; myom; myomaxin; xeplin; Xin actin-binding repeat containing 2 short splice form; xin actin-binding repeat-containing protein 2; xin-beta; Xin2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39267,276,343 - 67,356,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl267,004,178 - 67,356,959 (+)EnsemblGRCm39 Ensembl
GRCm38267,446,000 - 67,526,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl267,173,834 - 67,526,615 (+)EnsemblGRCm38mm10GRCm38
MGSCv37267,284,059 - 67,364,663 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36267,246,841 - 67,327,445 (+)NCBIMGSCv36mm8
Celera269,121,528 - 69,202,070 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
anchoring junction  (IEA)
cell junction  (IEA)
cytosol  (TAS)
focal adhesion  (IBA,ISO)
stress fiber  (IBA,ISO)
Z disc  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Mutation burden analysis of six common mental disorders in African Americans by whole genome sequencing. Liu Y, etal., Hum Mol Genet. 2022 Nov 10;31(22):3769-3776. doi: 10.1093/hmg/ddac129.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:16141072   PMID:16141073   PMID:16500513   PMID:16708114   PMID:17046827   PMID:17766470   PMID:18327258   PMID:18682726   PMID:20093629  
PMID:20360251   PMID:21267068   PMID:21677750   PMID:21689717   PMID:21873635   PMID:23261932   PMID:24457600   PMID:25653358   PMID:25772365   PMID:27206985   PMID:28378742   PMID:29111324  
PMID:29306897   PMID:30410445   PMID:32325033   PMID:32938943   PMID:37294664  


Genomics

Comparative Map Data
Xirp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39267,276,343 - 67,356,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl267,004,178 - 67,356,959 (+)EnsemblGRCm39 Ensembl
GRCm38267,446,000 - 67,526,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl267,173,834 - 67,526,615 (+)EnsemblGRCm38mm10GRCm38
MGSCv37267,284,059 - 67,364,663 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36267,246,841 - 67,327,445 (+)NCBIMGSCv36mm8
Celera269,121,528 - 69,202,070 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.31NCBI
XIRP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382166,888,480 - 167,259,753 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2166,888,480 - 167,259,753 (+)EnsemblGRCh38hg38GRCh38
GRCh372167,744,990 - 168,116,263 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362167,468,221 - 167,824,509 (+)NCBINCBI36Build 36hg18NCBI36
Celera2161,368,680 - 161,725,410 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2159,625,428 - 159,996,667 (+)NCBIHuRef
CHM1_12167,750,858 - 168,122,133 (+)NCBICHM1_1
T2T-CHM13v2.02167,346,432 - 167,717,651 (+)NCBIT2T-CHM13v2.0
Xirp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8372,534,175 - 72,621,056 (+)NCBIGRCr8
mRatBN7.2352,126,213 - 52,213,094 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl351,870,092 - 52,213,091 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx355,498,043 - 55,591,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0364,081,635 - 64,175,194 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0361,847,934 - 61,934,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0353,563,207 - 53,658,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl353,563,194 - 53,658,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0360,181,174 - 60,274,635 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4349,414,869 - 49,502,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1349,311,240 - 49,398,505 (+)NCBI
Celera351,697,264 - 51,784,744 (+)NCBICelera
Cytogenetic Map3q21NCBI
Xirp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554497,052,613 - 7,131,792 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554497,054,636 - 7,131,668 (-)NCBIChiLan1.0ChiLan1.0
XIRP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21369,534,910 - 69,901,422 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B69,549,886 - 69,916,398 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B54,445,543 - 54,516,773 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B171,919,285 - 171,990,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B171,642,482 - 171,989,732 (+)Ensemblpanpan1.1panPan2
XIRP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13612,160,013 - 12,234,663 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3611,939,793 - 12,234,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3612,233,694 - 12,308,249 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03612,281,195 - 12,355,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3612,057,239 - 12,355,868 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13612,367,566 - 12,440,332 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03612,347,127 - 12,413,286 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03612,464,320 - 12,538,902 (+)NCBIUU_Cfam_GSD_1.0
Xirp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303129,399,501 - 129,441,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646912,176,498 - 12,190,641 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646912,176,543 - 12,243,510 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XIRP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1573,422,267 - 73,741,134 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11573,665,876 - 73,741,046 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21582,522,547 - 82,597,615 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap15q15-q22NCBI
XIRP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11052,382,131 - 52,759,563 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1052,705,531 - 52,753,355 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040146,764,839 - 146,818,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xirp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247874,912,862 - 5,002,551 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247874,912,941 - 4,998,889 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Xirp2
3130 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:682
Count of miRNA genes:362
Interacting mature miRNAs:443
Transcripts:ENSMUST00000028410, ENSMUST00000112347
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
13432184Actdes1_mactivity chamber total difference ethanol/saline 1 (mouse)25939228769292287Mouse
13432174Actres5_mactivity response to ethanol/saline 5 (mouse)25989228769792287Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
13506939Pbwg1.12_mpostnatal body weight growth 1.12 (mouse)26513241268703425Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse

Markers in Region
AI452089  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38267,526,443 - 67,526,527UniSTSGRCm38
MGSCv37267,364,500 - 67,364,584UniSTSGRCm37
Celera269,201,907 - 69,201,991UniSTS
Cytogenetic Map2C1.3UniSTS
Whitehead/MRC_RH21068.0UniSTS
UniSTS:225077  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38267,512,778 - 67,512,924UniSTSGRCm38
MGSCv37267,350,835 - 67,350,981UniSTSGRCm37
Celera269,188,242 - 69,188,388UniSTS
Cytogenetic Map2C1.3UniSTS
D2Jcs24  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38267,468,519 - 67,468,808UniSTSGRCm38
MGSCv37267,306,576 - 67,306,865UniSTSGRCm37
Celera269,143,970 - 69,144,259UniSTS
Cytogenetic Map2C1.3UniSTS
cM Map238.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001083919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK009107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY775570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY775571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY775572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ011666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF119712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF119713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF119714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF119715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF119716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF122140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU286528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU286529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU286530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU286531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM273012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000028410   ⟹   ENSMUSP00000028410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,276,346 - 67,356,950 (+)Ensembl
GRCm38.p6 Ensembl267,446,002 - 67,526,606 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112347   ⟹   ENSMUSP00000107966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,276,346 - 67,356,958 (+)Ensembl
GRCm38.p6 Ensembl267,446,002 - 67,526,614 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,004,178 - 67,016,556 (+)Ensembl
GRCm38.p6 Ensembl267,173,834 - 67,186,212 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238878   ⟹   ENSMUSP00000158861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,276,348 - 67,338,750 (+)Ensembl
GRCm38.p6 Ensembl267,446,004 - 67,508,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238912   ⟹   ENSMUSP00000159084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,004,178 - 67,356,959 (+)Ensembl
GRCm38.p6 Ensembl267,173,834 - 67,526,615 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,025,100 - 67,356,948 (+)Ensembl
GRCm38.p6 Ensembl267,194,756 - 67,526,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239009   ⟹   ENSMUSP00000158994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,004,178 - 67,356,959 (+)Ensembl
GRCm38.p6 Ensembl267,173,834 - 67,526,615 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,025,100 - 67,356,948 (+)Ensembl
GRCm38.p6 Ensembl267,194,756 - 67,526,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239060   ⟹   ENSMUSP00000159181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,276,346 - 67,356,948 (+)Ensembl
GRCm38.p6 Ensembl267,446,002 - 67,526,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,025,100 - 67,356,948 (+)Ensembl
GRCm38.p6 Ensembl267,194,756 - 67,526,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239164   ⟹   ENSMUSP00000159177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl267,347,306 - 67,355,657 (+)Ensembl
GRCm38.p6 Ensembl267,516,962 - 67,525,313 (+)Ensembl
RefSeq Acc Id: NM_001024618   ⟹   NP_001019789
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39267,276,346 - 67,356,950 (+)NCBI
GRCm38267,446,002 - 67,526,606 (+)NCBI
MGSCv37267,284,059 - 67,364,663 (+)RGD
Celera269,121,528 - 69,202,070 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001083919   ⟹   NP_001077388
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39267,276,346 - 67,356,948 (+)NCBI
GRCm38267,446,002 - 67,526,604 (+)NCBI
MGSCv37267,284,059 - 67,364,663 (+)RGD
Celera269,121,528 - 69,202,070 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239520   ⟹   XP_011237822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39267,276,343 - 67,356,964 (+)NCBI
GRCm38267,446,000 - 67,526,620 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001019789   ⟸   NM_001024618
- Peptide Label: isoform 1
- UniProtKB: Q5S4P8 (UniProtKB/Swiss-Prot),   Q5S4P7 (UniProtKB/Swiss-Prot),   Q5S4P6 (UniProtKB/Swiss-Prot),   A2AVA2 (UniProtKB/Swiss-Prot),   A1ECA5 (UniProtKB/Swiss-Prot),   Q8BS23 (UniProtKB/Swiss-Prot),   Q4U4S6 (UniProtKB/Swiss-Prot),   A0A5F8MPR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001077388   ⟸   NM_001083919
- Peptide Label: isoform 2
- UniProtKB: A0A5F8MPR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237822   ⟸   XM_011239520
- Peptide Label: isoform X1
- UniProtKB: A0A5F8MPR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000159177   ⟸   ENSMUST00000239164
RefSeq Acc Id: ENSMUSP00000107966   ⟸   ENSMUST00000112347
RefSeq Acc Id: ENSMUSP00000028410   ⟸   ENSMUST00000028410
RefSeq Acc Id: ENSMUSP00000158994   ⟸   ENSMUST00000239009
RefSeq Acc Id: ENSMUSP00000159181   ⟸   ENSMUST00000239060
RefSeq Acc Id: ENSMUSP00000158861   ⟸   ENSMUST00000238878
RefSeq Acc Id: ENSMUSP00000159084   ⟸   ENSMUST00000238912
Protein Domains
LIM zinc-binding

Promoters
RGD ID:6877474
Promoter ID:EPDNEW_M2188
Type:multiple initiation site
Name:Xirp2_1
Description:Mus musculus xin actin-binding repeat containing 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2187  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38267,446,002 - 67,446,062EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685198 AgrOrtholog
Ensembl Genes ENSMUSG00000027022 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028410 ENTREZGENE
  ENSMUST00000028410.4 UniProtKB/Swiss-Prot
  ENSMUST00000112347 ENTREZGENE
  ENSMUST00000112347.8 UniProtKB/Swiss-Prot
  ENSMUST00000238878.2 UniProtKB/TrEMBL
  ENSMUST00000238912.2 UniProtKB/TrEMBL
  ENSMUST00000239009.2 UniProtKB/TrEMBL
  ENSMUST00000239060.2 UniProtKB/TrEMBL
  ENSMUST00000239164.2 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actin-binding_Xin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XIRP1/XIRP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:241431 UniProtKB/Swiss-Prot
MGD MGI:2685198 ENTREZGENE
NCBI Gene 241431 ENTREZGENE
PANTHER PTHR22591 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22591:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Xin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Xirp2 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A089VPF9_MOUSE UniProtKB/TrEMBL
  A0A5F8MP54_MOUSE UniProtKB/TrEMBL
  A0A5F8MPJ5_MOUSE UniProtKB/TrEMBL
  A0A5F8MPR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5F8MQC2_MOUSE UniProtKB/TrEMBL
  A1ECA5 ENTREZGENE
  A2AVA2 ENTREZGENE
  A9YSG0_MOUSE UniProtKB/TrEMBL
  A9YSG1_MOUSE UniProtKB/TrEMBL
  A9YSG2_MOUSE UniProtKB/TrEMBL
  A9YSG3_MOUSE UniProtKB/TrEMBL
  B2BBR6_MOUSE UniProtKB/TrEMBL
  B2BBR7_MOUSE UniProtKB/TrEMBL
  B2BBR8_MOUSE UniProtKB/TrEMBL
  B2BBR9_MOUSE UniProtKB/TrEMBL
  Q4U4S6 ENTREZGENE
  Q5S4P6 ENTREZGENE
  Q5S4P7 ENTREZGENE
  Q5S4P8 ENTREZGENE
  Q8BS23 ENTREZGENE
  XIRP2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A1ECA5 UniProtKB/Swiss-Prot
  A2AVA2 UniProtKB/Swiss-Prot
  Q5S4P6 UniProtKB/Swiss-Prot
  Q5S4P7 UniProtKB/Swiss-Prot
  Q5S4P8 UniProtKB/Swiss-Prot
  Q8BS23 UniProtKB/Swiss-Prot