Dhx16 (DEAH-box helicase 16) - Rat Genome Database

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Gene: Dhx16 (DEAH-box helicase 16) Rattus norvegicus
Analyze
Symbol: Dhx16
Name: DEAH-box helicase 16
RGD ID: 1302963
Description: Predicted to enable several functions, including helicase activity; pattern recognition receptor activity; and ubiquitin binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within antiviral innate immune response. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Predicted to be active in cytoplasm. Orthologous to human DHX16 (DEAH-box helicase 16); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Dbp2; Ddx16; DEAH (Asp-Glu-Ala-His) box polypeptide 16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,866,804 - 2,879,790 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl202,866,804 - 2,879,751 (-)EnsemblGRCr8
mRatBN7.2202,862,000 - 2,874,991 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,862,000 - 2,874,948 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx202,913,756 - 2,926,712 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,918,726 - 2,931,683 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,944,897 - 2,957,846 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,368,971 - 3,386,087 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,367,150 - 3,386,106 (-)Ensemblrn6Rnor6.0
Rnor_5.0205,466,494 - 5,483,222 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,009,770 - 3,022,969 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera20288,017 - 301,014 (-)NCBICelera
RGSC_v3.1203,009,977 - 3,023,169 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functions of the DExD/H-box proteins in nuclear pre-mRNA splicing. Chang TH, etal., Biochim Biophys Acta. 2013 Aug;1829(8):764-74. doi: 10.1016/j.bbagrm.2013.02.006. Epub 2013 Feb 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Cloning and characterization of a human DEAH-box RNA helicase, a functional homolog of fission yeast Cdc28/Prp8. Imamura O, etal., Nucleic Acids Res 1998 May 1;26(9):2063-8.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:20423332   PMID:22658674   PMID:22681889   PMID:25296192   PMID:29360106  


Genomics

Comparative Map Data
Dhx16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,866,804 - 2,879,790 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl202,866,804 - 2,879,751 (-)EnsemblGRCr8
mRatBN7.2202,862,000 - 2,874,991 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,862,000 - 2,874,948 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx202,913,756 - 2,926,712 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,918,726 - 2,931,683 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,944,897 - 2,957,846 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,368,971 - 3,386,087 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,367,150 - 3,386,106 (-)Ensemblrn6Rnor6.0
Rnor_5.0205,466,494 - 5,483,222 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,009,770 - 3,022,969 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera20288,017 - 301,014 (-)NCBICelera
RGSC_v3.1203,009,977 - 3,023,169 (-)NCBI
Cytogenetic Map20p12NCBI
DHX16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,653,127 - 30,673,006 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,653,119 - 30,673,013 (-)Ensemblhg38GRCh38
GRCh37630,620,904 - 30,640,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,728,886 - 30,748,736 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34630,728,885 - 30,748,736NCBI
Celera632,219,005 - 32,238,967 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,420,829 - 30,440,797 (-)NCBIHuRef
CHM1_1630,623,004 - 30,642,940 (-)NCBICHM1_1
T2T-CHM13v2.0630,517,301 - 30,537,211 (-)NCBIT2T-CHM13v2.0
Dhx16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,190,657 - 36,203,562 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,190,711 - 36,203,562 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381735,879,764 - 35,892,670 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,879,819 - 35,892,670 (+)Ensemblmm10GRCm38
MGSCv371736,016,723 - 36,029,615 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361735,487,872 - 35,500,723 (+)NCBIMGSCv36mm8
Celera1739,389,023 - 39,401,921 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.74NCBI
Dhx16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583654,921 - 668,392 (-)Ensembl
ChiLan1.0NW_004955583657,425 - 668,390 (-)NCBIChiLan1.0ChiLan1.0
DHX16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,213,250 - 45,233,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,176,428 - 41,196,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,397,774 - 30,417,758 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,267,669 - 31,287,435 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,267,669 - 31,287,435 (-)EnsemblpanPan2panpan1.1
DHX16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112460,669 - 478,026 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12460,713 - 478,001 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha12598,314 - 615,337 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.012603,895 - 621,190 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12603,895 - 621,168 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112461,568 - 478,541 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012531,020 - 548,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012599,625 - 616,622 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dhx16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,959,004 - 33,976,386 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837324,243 - 341,713 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936837324,244 - 341,667 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHX16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,190,656 - 23,208,087 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1723,190,645 - 23,208,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,912,272 - 26,930,002 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DHX16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,780,965 - 41,801,310 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,780,987 - 41,801,219 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604430,349,931 - 30,370,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dhx16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,040,711 - 25,057,856 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475425,040,684 - 25,054,632 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dhx16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1189,089,487 - 9,102,188 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dhx16
102 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:17
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000065025
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013629303Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH131668  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,861,662 - 2,861,856 (+)MAPPERmRatBN7.2
Rnor_6.0203,368,634 - 3,368,827NCBIRnor6.0
Rnor_5.0205,466,157 - 5,466,350UniSTSRnor5.0
RGSC_v3.4203,009,433 - 3,009,626UniSTSRGSC3.4
Celera20287,680 - 287,873UniSTS
RH 3.4 Map2052.1UniSTS
Cytogenetic Map20p12UniSTS
AI450394  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,877,814 - 2,877,908 (+)MAPPERmRatBN7.2
Rnor_6.0203,372,661 - 3,372,754NCBIRnor6.0
Rnor_5.0205,470,184 - 5,470,277UniSTSRnor5.0
Celera20303,880 - 303,973UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065025   ⟹   ENSRNOP00000062603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,367,150 - 3,386,106 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080770   ⟹   ENSRNOP00000075570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,368,930 - 3,372,070 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089550   ⟹   ENSRNOP00000072216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl202,866,804 - 2,879,751 (-)Ensembl
mRatBN7.2 Ensembl202,862,000 - 2,874,948 (-)Ensembl
Rnor_6.0 Ensembl203,377,228 - 3,386,048 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157293   ⟹   ENSRNOP00000109781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl202,868,389 - 2,879,751 (-)Ensembl
RefSeq Acc Id: NM_212496   ⟹   NP_997661
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,866,804 - 2,879,751 (-)NCBI
mRatBN7.2202,862,000 - 2,874,948 (-)NCBI
Rnor_6.0203,368,971 - 3,386,087 (-)NCBI
Rnor_5.0205,466,494 - 5,483,222 (-)NCBI
RGSC_v3.4203,009,770 - 3,022,969 (-)RGD
Celera20288,017 - 301,014 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098480   ⟹   XP_038954408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,868,412 - 2,879,789 (-)NCBI
mRatBN7.2202,863,606 - 2,874,991 (-)NCBI
RefSeq Acc Id: XM_039098481   ⟹   XP_038954409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,868,220 - 2,879,789 (-)NCBI
mRatBN7.2202,863,419 - 2,874,991 (-)NCBI
RefSeq Acc Id: XM_039098482   ⟹   XP_038954410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,873,060 - 2,879,790 (-)NCBI
mRatBN7.2202,868,256 - 2,874,991 (-)NCBI
RefSeq Acc Id: XM_039098483   ⟹   XP_038954411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,873,096 - 2,879,790 (-)NCBI
mRatBN7.2202,868,287 - 2,874,991 (-)NCBI
RefSeq Acc Id: XM_039098484   ⟹   XP_038954412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,866,804 - 2,875,819 (-)NCBI
mRatBN7.2202,862,000 - 2,871,006 (-)NCBI
RefSeq Acc Id: XM_063278997   ⟹   XP_063135067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,873,065 - 2,879,790 (-)NCBI
RefSeq Acc Id: NP_997661   ⟸   NM_212496
- UniProtKB: Q6MG13 (UniProtKB/TrEMBL),   D3ZB40 (UniProtKB/TrEMBL),   A0A9K3Y7B8 (UniProtKB/TrEMBL),   A0A0G2K2E8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075570   ⟸   ENSRNOT00000080770
Ensembl Acc Id: ENSRNOP00000062603   ⟸   ENSRNOT00000065025
Ensembl Acc Id: ENSRNOP00000072216   ⟸   ENSRNOT00000089550
RefSeq Acc Id: XP_038954412   ⟸   XM_039098484
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954409   ⟸   XM_039098481
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954408   ⟸   XM_039098480
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954410   ⟸   XM_039098482
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954411   ⟸   XM_039098483
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135067   ⟸   XM_063278997
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000109781   ⟸   ENSRNOT00000157293
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG13-F1-model_v2 AlphaFold Q6MG13 1-1044 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701300
Promoter ID:EPDNEW_R11821
Type:initiation region
Name:Dhx16_1
Description:DEAH-box helicase 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0203,386,099 - 3,386,159EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302963 AgrOrtholog
BioCyc Gene G2FUF-4783 BioCyc
Ensembl Genes ENSRNOG00000030157 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089550 ENTREZGENE
  ENSRNOT00000089550.3 UniProtKB/TrEMBL
  ENSRNOT00000157293 ENTREZGENE
  ENSRNOT00000157293.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1080 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_C UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  DUF1605 UniProtKB/TrEMBL
  HA2_WH UniProtKB/TrEMBL
  Helicase-assoc_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:294232 UniProtKB/TrEMBL
NCBI Gene 294232 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/TrEMBL
  PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX16 UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  DUF1605 UniProtKB/TrEMBL
  HA2 UniProtKB/TrEMBL
  HA2_C UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PhenoGen Dhx16 PhenoGen
PROSITE DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030157 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HA2 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K2E8 ENTREZGENE
  A0A9K3Y7B8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LGC9_RAT UniProtKB/TrEMBL
  D3ZB40 ENTREZGENE
  Q6MG13 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A0G2K2E8 UniProtKB/TrEMBL
  D3ZB40 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Dhx16  DEAH-box helicase 16  Dhx16  DEAH (Asp-Glu-Ala-His) box polypeptide 16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Dhx16  DEAH (Asp-Glu-Ala-His) box polypeptide 16  Ddx16    Symbol updated 1299863 APPROVED
2005-02-14 Ddx16  DEAH (Asp-Glu-Ala-His) box polypeptide 16      Symbol and Name status set to provisional 70820 PROVISIONAL