rs1800871 Rat Genome Database

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Variant: rs1800871 -  Homo sapiens

RGD ID: 127303455
RS ID: rs1800871
ClinVar ID: CV1153434
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: IL19  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 1 206,946,634
GRCh38 1 206,773,289
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
LRG_1230:g.4206T>C
NG_012088.1:g.4206T>C
NC_000001.11:g.206773289A>G
NC_000001.10:g.206946634A>G
More... 		06/10/2022 intron variant benign|uncertain risk allele Leprosy 1; LEPROSY, PAUCIBACILLARY TYPE, SUSCEPTIBILITY TO, 1; LPRS1
Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
GWAS Catalog Data
GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG SNP Passing QC Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GCST000728 Behcet's disease 611 Japanese ancestry cases, 737 Japanese ancestry controls T 0.31 1E-14 14.0 Affymetrix [320438] 1.45 Behcet's syndrome (EFO:0003780)
 PMID:20622879
GCST003854 Gut microbiota (functional units) 984 European ancestry individuals A NR 0.000002 5.698970004336019 Illumina [8100000] (imputed) 4.711804 gut microbiome measurement (EFO:0007874)
 PMID:27694959
GCST007839 Mouth ulcers 47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls G 0.244271 6E-236 235.22184874961636 Affymetrix, Illumina [9851866] (imputed) 1.1814299 Oral ulcer (HP:0000155)
 PMID:30837455

Variant Details
Variant Transcripts
Gene Symbol:IL19
Accession:NM_153758
Location:5UTRS;INTRON

Gene Symbol:IL19
Accession:NM_001393490
Location:5UTRS;INTRON

Gene Symbol:IL19
Accession:NM_013371
Location:INTRON

Gene Symbol:IL19
Accession:XM_011509450
Location:INTRON

Gene Symbol:IL19
Accession:NM_001369605
Location:INTRON

Gene Symbol:IL19
Accession:NM_001393491
Location:INTRON

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV001515490 CLINVAR
  RCV002291759 CLINVAR
dbSNP (RS) rs1800871 CLINVAR
GWAS Catalog GCST007839 GWAS Catalog
MedGen C0021390 CLINVAR
  C1835932 CLINVAR
NCBI Gene IL10 CLINVAR
  IL19 CLINVAR
OMIM 124092 CLINVAR
  605687 CLINVAR
  609888 CLINVAR
SNOMED CT 24526004 CLINVAR