Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: DA.F344-(D10Rat195-D10Arb27)/Nsi

Symbol: DA.F344-(D10Rat195-D10Arb27)/Nsi
Strain: DA.F344-(D10Rat195-D10Arb27)
Substrain: Nsi
RGD ID: 7364976
Citation ID: RRID:RRRC_00677
Ontology ID: RS:0003546
Also Known As: DA.F344(Cia5d3s); DA.F344-(D10Rat195-D10Arb27)/Nsi
Type: congenic
Available Source: Rat Resource and Research Center
Origination: North Shore-Long Island Jewish Research Institute,350 Community Drive - Manhasset, NY 11030.
Description: Congenic strain created by backcrossing F344 into DA/BklArbNsi 8 times then brother-sister mating to maintain in the homozygous state
Coat Color: agouti
Last Known Status: Cryopreserved Sperm (as of 2019-02-19)
Research Usage arthritis/autoimmunity studies
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21062,541,890 - 65,927,370RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01065,234,285 - 68,305,173RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01066,394,066 - 67,971,488RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41063,690,620 - 69,160,517RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by the Rat Resource & Research Center Personal Communication with Rat Resource & Research Center
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat195)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21062,541,890 - 62,542,101 (-)MAPPER
Rnor_6.01065,234,285 - 65,234,495NCBI
Rnor_5.01066,394,066 - 66,394,276UniSTS
RGSC_v3.41063,690,620 - 63,690,831RGD
RGSC_v3.41063,690,621 - 63,690,831UniSTS
RGSC_v3.11063,704,243 - 63,704,454RGD
Celera1061,522,577 - 61,522,787UniSTS
FHH x ACI Map1052.73RGD
FHH x ACI Map1052.73UniSTS

Flank 2 / 1 (D10Arb27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21065,927,233 - 65,927,370 (+)MAPPER
Rnor_6.01068,305,037 - 68,305,173NCBI
Rnor_5.01067,971,352 - 67,971,488UniSTS
RGSC_v3.41069,160,380 - 69,160,517RGD
RGSC_v3.41069,160,381 - 69,160,517UniSTS
RGSC_v3.11069,174,003 - 69,174,140RGD
Celera1064,883,710 - 64,883,846UniSTS
SHRSP x BN Map1047.6099UniSTS
SHRSP x BN Map1047.6099RGD
FHH x ACI Map1053.73RGD
Cytogenetic Map10q26UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other F344 alleles between: D10Rat195 and D10Arb27. DA alleles at: D10Wox13 and D10Nsi90. 2292495
Database Acc Id Source(s)
RRRC RRRC:00677 RGD