G54393 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: G54393

Symbol: G54393
Previously known as: EA2/19a; 
RGD ID: 5092520
Expected Size: 289 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371913,409,935 - 13,410,223UniSTSGRCh37
Celera1913,300,437 - 13,300,725UniSTS
Cytogenetic Map19p13UniSTS
HuRef1912,982,174 - 12,982,462UniSTS
Is Marker For: Genes:   CACNA1A  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCATCCAAGCTACAGTGCCTA
Reverse Primer TCTTGTTGGTGTTGTTGTTGC
 

Region

Nucleotide Sequences
GenBank Nucleotide AC026805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001627.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G54393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL305419.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583369.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976403.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z80130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 773 UniSTS
UniSTS 116166 UniSTS