AW208785 Marker Search Result - Rat Genome Database

Symbol:

AW208785

Previously known as:

RGD ID:

5051617

Expected Size:

116 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	65,604,709 - 65,604,825 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	70,344,637 - 70,344,752	NCBI	Rnor6.0
Rnor_5.0	X	71,216,589 - 71,216,704	UniSTS	Rnor5.0
RGSC_v3.4	X	88,506,686 - 88,506,801	UniSTS	RGSC3.4
Celera	X	65,964,117 - 65,964,232	UniSTS
Cytogenetic Map	X	q31	UniSTS

Is Marker For:

Genes: Igbp1

Annotation

References - curated

#	Reference Title	Reference Citation
1.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence

Region

Genes in Region

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
62011	Igbp1	immunoglobulin binding protein 1	X	65582832	65605078	Rat

Nucleotide Sequences


RefSeq Transcripts	NM_031624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF000577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW208785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC068202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
70221	Bp56	Blood pressure QTL 56	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	57042141	65612192	Rat

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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