D2Rat378 Marker Search Result - Rat Genome Database

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Marker: D2Rat378

Symbol: D2Rat378
Previously known as: R0350-A09; oxsts10638; 
RGD ID: 42562
Expected Size: 203 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0228,290,934 - 28,291,134NCBIRnor6.0
Celera224,826,314 - 24,826,515UniSTS
SHRSP x BN Map29.3698UniSTS
SHRSP x BN Map29.3698RGD


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCCCCAGGCAGAAGATTAGA
Reverse Primer GGGAAATTTTTGCTACCTCG
 
Template 
TGNATGCTGCAGGTCAGATCTAGAGGATCCCCCCGTTTCCCCAGGCAGAAGATTAGAAAGGACC
AGCAGTTGAGCCATAAGCCAGGTTAAAAACTAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTTTCGTCCATGGATCCGAGAGAACCTGGGTGGGGGTCTGGTA
GCACAGCCCATTTCCTAGAGTTTAAGGTCGAGGTAGCAAAAATTTCCCANTACATTCCAGTCTT
CCTATCATTAGGTGTTTACAACAAGTGNTTCTGTTTACTGGGACTTGACACATGCTAATCATAA
TTCATCCTACCTGTCCTTGGCAAACATTGGTGCANTANTTTTCCTGATTTGTCTTNTGTGCCGA
GGTTACTATAGAAAGTGGNAGGGGAGCTCCAGGGGGGTACCGAGCTCGAATTCGTAATCATGGT
CATAGCTGTTTCCTGTGTGAAATTGTTATCCGNTCACAATTCCACACAACATACGAGCCGGAAG
CATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCA
CTGCCCGTTTCCAGTCGGGAAACCTGTCGTGCCAGTGCATTAATGAATCGGCCAACGCNGGGGA
GAGGGGTTTGGTATTGGGCGCCAGGGTGGTTTTTCTTTCACCAGTGAGACGGGCACAGTGATTG
CCTTCACCGNTGGCCCTGAGAGAGTTGCAGCAAGGGTCACGCTGGTTTGCCCAGCAGGAAAATC
TGTTGAGGTGTNCGAATCGGAAATCNTTATAATAANGATAGCCNNNTNNTTGNTNTTTNNTTGN
NAGNTCNTTTNGA

Region

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
UniSTS 227512 UniSTS