STS-X15422 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: STS-X15422

Symbol: STS-X15422
Previously known as:
RGD ID: 2159362
Expected Size: 218 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371054,525,246 - 54,525,463UniSTSGRCh37
Build 361054,195,252 - 54,195,469RGDNCBI36
Celera1047,788,178 - 47,788,395RGD
Cytogenetic Map10q11.2UniSTS
HuRef1048,503,854 - 48,504,071UniSTS
GeneMap99-GB4 RH Map10321.58UniSTS
NCBI RH Map10642.8UniSTS
Is Marker For: Genes:   MBL2  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGCCTATCTAAACTGGATTCA
Reverse Primer AGCGGCATAACTGTGTGT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_000242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF080510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001618.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU596574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G05897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL296040.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976373.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 4153 UniSTS
UniSTS STS-X15422 UniSTS SSLP Pipeline