D2Got364 Marker Search Result - Rat Genome Database

Symbol:

D2Got364

Previously known as:

oxsts4369; OT86.37; D0Got1011;

RGD ID:

1629481

Expected Size:

258 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	4,076,761 - 4,077,019 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	1,555,761 - 1,556,018	NCBI	Rnor6.0
Rnor_5.0	2	1,525,015 - 1,525,272	UniSTS	Rnor5.0
RGSC_v3.4	2	1,602,774 - 1,603,031	UniSTS	RGSC3.4
Celera	2	572,424 - 572,681	UniSTS
Cytogenetic Map	2	q11	UniSTS

Is Marker For:

Genes: Cast

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence

Region

Genes in Region

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
2278	Cast	calpastatin	2	3973112	4082658	Rat

Nucleotide Sequences


GenBank Nucleotide	AC111648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AU025058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH613196.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631682	Bp115	Blood pressure QTL 115	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	1	37410502	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	41244106	Rat

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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