Clstn1 (calsyntenin 1) - Rat Genome Database

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Gene: Clstn1 (calsyntenin 1) Rattus norvegicus
Analyze
Symbol: Clstn1
Name: calsyntenin 1
RGD ID: 1306458
Description: Predicted to enable X11-like protein binding activity; amyloid-beta binding activity; and kinesin binding activity. Predicted to be involved in several processes, including neurotransmitter receptor transport to postsynaptic membrane; positive regulation of synaptic transmission; and regulation of synapse organization. Predicted to act upstream of or within regulation of cell growth. Is active in several cellular components, including GABA-ergic synapse; postsynaptic density membrane; and spine apparatus membrane. Orthologous to human CLSTN1 (calsyntenin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alc-alpha; alcadein-alpha; calsyntenin-1; LOC313717
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,314,128 - 165,377,627 (+)NCBIGRCr8
mRatBN7.25160,031,235 - 160,094,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,031,308 - 160,094,583 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,747,935 - 162,811,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,568,273 - 164,630,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,524,636 - 164,586,979 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,533,262 - 166,601,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,533,181 - 166,601,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,179,553 - 170,247,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,671,098 - 166,734,907 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,681,501 - 166,744,093 (+)NCBI
Celera5158,300,709 - 158,364,026 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Calsyntenin-1, a proteolytically processed postsynaptic membrane protein with a cytoplasmic calcium-binding domain. Vogt L, etal., Mol Cell Neurosci. 2001 Jan;17(1):151-66. doi: 10.1006/mcne.2000.0937.
Additional References at PubMed
PMID:12972431   PMID:15326124   PMID:16760430   PMID:17332754   PMID:18158283   PMID:22434822   PMID:23376485   PMID:24006456   PMID:24613359   PMID:24966372  


Genomics

Comparative Map Data
Clstn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,314,128 - 165,377,627 (+)NCBIGRCr8
mRatBN7.25160,031,235 - 160,094,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,031,308 - 160,094,583 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,747,935 - 162,811,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,568,273 - 164,630,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,524,636 - 164,586,979 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,533,262 - 166,601,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,533,181 - 166,601,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,179,553 - 170,247,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,671,098 - 166,734,907 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,681,501 - 166,744,093 (+)NCBI
Celera5158,300,709 - 158,364,026 (+)NCBICelera
Cytogenetic Map5q36NCBI
CLSTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,728,926 - 9,824,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,728,926 - 9,823,984 (-)EnsemblGRCh38hg38GRCh38
GRCh3719,788,984 - 9,884,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,711,666 - 9,807,137 (-)NCBINCBI36Build 36hg18NCBI36
Build 3419,723,345 - 9,818,816NCBI
Celera18,900,350 - 8,996,174 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef18,945,184 - 9,040,629 (-)NCBIHuRef
CHM1_119,777,615 - 9,873,126 (-)NCBICHM1_1
T2T-CHM13v2.019,271,709 - 9,367,444 (-)NCBIT2T-CHM13v2.0
Clstn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,670,536 - 149,733,356 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,670,925 - 149,733,356 (+)EnsemblGRCm39 Ensembl
GRCm384149,585,111 - 149,648,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,586,468 - 149,648,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,960,747 - 149,022,008 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,430,438 - 148,491,699 (+)NCBIMGSCv36mm8
Celera4151,851,767 - 151,914,518 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.91NCBI
Clstn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,780,516 - 3,813,858 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,706,969 - 3,813,858 (+)NCBIChiLan1.0ChiLan1.0
CLSTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,392,800 - 218,492,742 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,038,457 - 217,138,388 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,495,571 - 8,591,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,724,743 - 9,822,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,846,511 - 9,882,049 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl19,724,743 - 9,774,760 (-)Ensemblpanpan1.1panPan2
LOC479600
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1562,937,154 - 63,093,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl562,938,511 - 63,093,275 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha562,952,722 - 63,108,259 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,163,686 - 63,319,401 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,163,694 - 63,246,405 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl563,269,946 - 63,296,185 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,185,433 - 63,340,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,024,857 - 63,180,154 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,428,607 - 63,584,033 (-)NCBIUU_Cfam_GSD_1.0
LOC101965661
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,211,448 - 33,321,384 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,696,640 - 3,729,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049366233,782,005 - 3,806,619 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,696,686 - 3,729,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLSTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,086,247 - 70,165,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,086,245 - 70,165,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2663,988,311 - 64,031,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLSTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,943,849 - 122,040,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,944,391 - 122,042,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,876,783 - 26,005,018 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Clstn1
763 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:436
Count of miRNA genes:229
Interacting mature miRNAs:285
Transcripts:ENSRNOT00000045063
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

Markers in Region
RH127701  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,094,236 - 160,094,454 (+)MAPPERmRatBN7.2
Rnor_6.05166,601,338 - 166,601,555NCBIRnor6.0
Rnor_5.05170,247,487 - 170,247,704UniSTSRnor5.0
RGSC_v3.45166,734,559 - 166,734,776UniSTSRGSC3.4
Celera5158,363,678 - 158,363,895UniSTS
RH 3.4 Map51116.1UniSTS
Cytogenetic Map5q36UniSTS
AW533824  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,077,279 - 160,077,480 (+)MAPPERmRatBN7.2
Rnor_6.05166,584,382 - 166,584,582NCBIRnor6.0
Rnor_5.05170,230,531 - 170,230,731UniSTSRnor5.0
RGSC_v3.45166,717,604 - 166,717,804UniSTSRGSC3.4
Celera5158,346,661 - 158,346,861UniSTS
Cytogenetic Map5q36UniSTS
BF411685  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,094,373 - 160,094,483 (+)MAPPERmRatBN7.2
Rnor_6.05166,601,475 - 166,601,584NCBIRnor6.0
Rnor_5.05170,247,624 - 170,247,733UniSTSRnor5.0
RGSC_v3.45166,734,696 - 166,734,805UniSTSRGSC3.4
Celera5158,363,815 - 158,363,924UniSTS
RH 3.4 Map51115.0UniSTS
Cytogenetic Map5q36UniSTS
AI237764  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,086,011 - 160,086,168 (+)MAPPERmRatBN7.2
Rnor_6.05166,593,113 - 166,593,269NCBIRnor6.0
Rnor_5.05170,239,262 - 170,239,418UniSTSRnor5.0
RGSC_v3.45166,726,334 - 166,726,490UniSTSRGSC3.4
Celera5158,355,391 - 158,355,547UniSTS
RH 3.4 Map51116.1UniSTS
Cytogenetic Map5q36UniSTS
RH15907  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,078,730 - 160,079,132 (+)MAPPERmRatBN7.2
Rnor_6.05166,585,833 - 166,586,234NCBIRnor6.0
Rnor_5.05170,231,982 - 170,232,383UniSTSRnor5.0
RGSC_v3.45166,719,055 - 166,719,455UniSTSRGSC3.4
Celera5158,348,112 - 158,348,512UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 16 4 15 4 6 9 74 35 40 11 6
Low 41 37 4 37 2 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000045063   ⟹   ENSRNOP00000047223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,031,308 - 160,094,583 (+)Ensembl
Rnor_6.0 Ensembl5166,533,181 - 166,601,684 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103823   ⟹   ENSRNOP00000094311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,063,805 - 160,094,583 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113486   ⟹   ENSRNOP00000089605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,031,308 - 160,094,583 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119851   ⟹   ENSRNOP00000086858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,031,308 - 160,094,583 (+)Ensembl
RefSeq Acc Id: NM_001007092   ⟹   NP_001007093
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,314,359 - 165,377,627 (+)NCBI
mRatBN7.25160,031,308 - 160,094,585 (+)NCBI
Rnor_6.05166,533,262 - 166,601,686 (+)NCBI
Rnor_5.05170,179,553 - 170,247,835 (+)NCBI
Celera5158,300,709 - 158,364,026 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110100   ⟹   XP_038966028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,314,128 - 165,377,627 (+)NCBI
mRatBN7.25160,031,235 - 160,094,585 (+)NCBI
RefSeq Acc Id: XM_039110101   ⟹   XP_038966029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,314,197 - 165,377,627 (+)NCBI
mRatBN7.25160,031,235 - 160,094,579 (+)NCBI
RefSeq Acc Id: XM_039110102   ⟹   XP_038966030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,314,197 - 165,377,627 (+)NCBI
mRatBN7.25160,031,235 - 160,094,579 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001007093   ⟸   NM_001007092
- Peptide Label: precursor
- UniProtKB: Q6Q0N0 (UniProtKB/Swiss-Prot),   A0A8I6AMV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000047223   ⟸   ENSRNOT00000045063
RefSeq Acc Id: XP_038966028   ⟸   XM_039110100
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GFE6 (UniProtKB/TrEMBL),   A6IUB8 (UniProtKB/TrEMBL),   A0A8I6AMV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966030   ⟸   XM_039110102
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QPW4 (UniProtKB/TrEMBL),   A0A8I6AMV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966029   ⟸   XM_039110101
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AC41 (UniProtKB/TrEMBL),   A0A8I6AMV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089605   ⟸   ENSRNOT00000113486
RefSeq Acc Id: ENSRNOP00000094311   ⟸   ENSRNOT00000103823
RefSeq Acc Id: ENSRNOP00000086858   ⟸   ENSRNOT00000119851
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6Q0N0-F1-model_v2 AlphaFold Q6Q0N0 1-952 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694275
Promoter ID:EPDNEW_R4800
Type:initiation region
Name:Clstn1_1
Description:calsyntenin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05166,533,214 - 166,533,274EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306458 AgrOrtholog
BioCyc Gene G2FUF-39125 BioCyc
Ensembl Genes ENSRNOG00000016398 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045063.4 UniProtKB/TrEMBL
  ENSRNOT00000103823 ENTREZGENE
  ENSRNOT00000103823.1 UniProtKB/TrEMBL
  ENSRNOT00000113486.1 UniProtKB/TrEMBL
  ENSRNOT00000119851.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calsyntenin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLSTN_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:313717 UniProtKB/Swiss-Prot
NCBI Gene 313717 ENTREZGENE
PANTHER CALSYNTENIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14139 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLSTN_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clstn1 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CADHERIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016398 RatGTEx
SMART SM00112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AC41 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GFE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QPW4 ENTREZGENE, UniProtKB/TrEMBL
  A6IUB8 ENTREZGENE, UniProtKB/TrEMBL
  CSTN1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Clstn1  calsyntenin 1  Clstn1_predicted  calsyntenin 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Clstn1_predicted  calsyntenin 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED