BMI1P1 (BMI1 proto-oncogene, polycomb ring finger pseudogene 1) - Rat Genome Database

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Gene: BMI1P1 (BMI1 proto-oncogene, polycomb ring finger pseudogene 1) Homo sapiens
Analyze
Symbol: BMI1P1
Name: BMI1 proto-oncogene, polycomb ring finger pseudogene 1
RGD ID: 9681293
HGNC Page HGNC:51428
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: lnc-OPHN1-5
Related Functional Gene: BMI1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X67,791,910 - 67,793,049 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX67,791,955 - 67,792,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37X67,011,752 - 67,012,891 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X66,928,519 - 66,929,697 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX67,361,446 - 67,364,362 (-)NCBICelera
Cytogenetic MapXq12NCBI
HuRefX60,839,658 - 60,842,574 (-)NCBIHuRef
CHM1_1X66,902,495 - 66,905,411 (-)NCBICHM1_1
T2T-CHM13v2.0X66,223,898 - 66,225,037 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:183
Count of miRNA genes:176
Interacting mature miRNAs:179
Transcripts:ENST00000445879
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 3 1
Below cutoff 59 64 40 16 37 8 207 59 189 8 75 71 8 62 126 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000445879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX67,791,955 - 67,792,895 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BMI1P1 COSMIC
Ensembl Genes ENSG00000234201 Ensembl, ENTREZGENE
GTEx ENSG00000234201 GTEx
HGNC ID HGNC:51428 ENTREZGENE
Human Proteome Map BMI1P1 Human Proteome Map
NCBI Gene BMI1P1 ENTREZGENE