Gm26885 (predicted gene, 26885) - Rat Genome Database

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Gene: Gm26885 (predicted gene, 26885) Mus musculus
Analyze
Symbol: Gm26885
Name: predicted gene, 26885
RGD ID: 9671786
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,665,812 - 29,710,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,665,893 - 29,710,899 (-)EnsemblGRCm39 Ensembl
GRCm381729,446,838 - 29,491,544 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,446,919 - 29,491,925 (-)EnsemblGRCm38mm10GRCm38
Celera1730,004,691 - 30,011,372 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14610273   PMID:17062627   PMID:17967808   PMID:18799693  


Genomics

Variants

.
Variants in Gm26885
1110 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:173
Interacting mature miRNAs:176
Transcripts:ENSMUST00000181920
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,682,158 - 29,710,539 (-)Ensembl
GRCm38.p6 Ensembl1729,463,184 - 29,491,565 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,680,169 - 29,710,899 (-)Ensembl
GRCm38.p6 Ensembl1729,461,195 - 29,491,925 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,665,893 - 29,683,724 (-)Ensembl
GRCm38.p6 Ensembl1729,446,919 - 29,464,750 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,682,114 - 29,686,330 (-)Ensembl
GRCm38.p6 Ensembl1729,463,140 - 29,467,356 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,665,927 - 29,684,174 (-)Ensembl
GRCm38.p6 Ensembl1729,446,953 - 29,465,200 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,593 - 29,683,961 (-)Ensembl
GRCm38.p6 Ensembl1729,462,619 - 29,464,987 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,680,179 - 29,686,912 (-)Ensembl
GRCm38.p6 Ensembl1729,461,205 - 29,464,620 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,684,157 - 29,685,123 (-)Ensembl
GRCm38.p6 Ensembl1729,465,183 - 29,466,149 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,684,364 - 29,686,917 (-)Ensembl
GRCm38.p6 Ensembl1729,465,390 - 29,467,943 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,602 - 29,686,730 (-)Ensembl
GRCm38.p6 Ensembl1729,462,628 - 29,467,756 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,682,158 - 29,688,558 (-)Ensembl
GRCm38.p6 Ensembl1729,463,184 - 29,469,584 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,665,893 - 29,686,701 (-)Ensembl
GRCm38.p6 Ensembl1729,446,919 - 29,467,727 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,592 - 29,686,750 (-)Ensembl
GRCm38.p6 Ensembl1729,462,618 - 29,467,776 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,680,169 - 29,683,733 (-)Ensembl
GRCm38.p6 Ensembl1729,461,195 - 29,464,759 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,682,314 - 29,710,175 (-)Ensembl
GRCm38.p6 Ensembl1729,463,340 - 29,491,201 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,593 - 29,684,157 (-)Ensembl
GRCm38.p6 Ensembl1729,462,619 - 29,465,183 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,444 - 29,683,900 (-)Ensembl
GRCm38.p6 Ensembl1729,462,470 - 29,464,926 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,593 - 29,684,155 (-)Ensembl
GRCm38.p6 Ensembl1729,462,619 - 29,465,181 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,593 - 29,683,129 (-)Ensembl
GRCm38.p6 Ensembl1729,462,619 - 29,464,155 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,681,606 - 29,688,605 (-)Ensembl
GRCm38.p6 Ensembl1729,462,632 - 29,469,631 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243586
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,686,114 - 29,686,912 (-)Ensembl
RefSeq Acc Id: NR_168683
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,680,868 - 29,710,518 (-)NCBI
GRCm381729,461,894 - 29,491,544 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168684
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,680,868 - 29,686,912 (-)NCBI
GRCm381729,461,894 - 29,467,938 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168685
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,680,868 - 29,686,912 (-)NCBI
GRCm381729,461,894 - 29,467,938 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168686
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,665,812 - 29,686,912 (-)NCBI
GRCm381729,446,838 - 29,467,938 (-)NCBI
Sequence:
Promoters
RGD ID:15094821
Promoter ID:EPDNEWNC_M2724
Type:multiple initiation site
Name:Gm26885_1
Description:predicted gene, 26885 [Source:MGI Symbol;Acc:MGI:5477379]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381729,464,155 - 29,464,215EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097125 Ensembl
MGD MGI:5477379 ENTREZGENE
NCBI Gene Gm26885 ENTREZGENE
PhenoGen Gm26885 PhenoGen
RNAcentral URS0001BBE37B RNACentral
  URS0001BBE3B3 RNACentral
  URS0001BBE4EF RNACentral
  URS0001BBE56E RNACentral