Gm35107 (predicted gene, 35107) - Rat Genome Database

Name: Gm35107
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm35107 (predicted gene, 35107) Mus musculus

Analyze

Symbol:

Gm35107

Name:

predicted gene, 35107

RGD ID:

9659415

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	47,973,632 - 47,994,945 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	47,973,780 - 48,083,674 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	48,884,927 - 48,906,068 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	X	36,385,419 - 36,406,518 (+)	NCBI		Celera
Cytogenetic Map	X	A5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:24200680	PMID:27899360

Genomics

Variants

Variants in Gm35107
515 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
13208553	Wght11_m	weight 11 (mouse)					X	11866239	59045360	Mouse
13208557	Lgth13_m	body length 13 (mouse)					X	11866239	59045360	Mouse
27226750	Femd9_m	femur midshaft diameter 9, 10 week (mouse)					X	33337463	55845360	Mouse
27226780	Femd12_m	femur midshaft diameter 12, 16 week (mouse)					X	34663653	56845360	Mouse
13208567	Bmiq12_m	body mass index QTL 12 (mouse)					X	35263653	77043606	Mouse
1301009	Pbwg7_m	postnatal body weight growth 7 (mouse)			Not determined		X	39113714	73113814	Mouse
4141565	Pbwg21_m	postnatal body weight growth 21 (mouse)			Not determined		X	39113714	73113814	Mouse
1300794	Spha2_m	sperm head anomaly 2 (mouse)			Not determined		X	39921498	86260137	Mouse
4142200	Rtwq1_m	reduced testis weight QTL 1 (mouse)			Not determined			41477060	75477203	Mouse
1301278	Bdln1_m	body length 1 (mouse)			Not determined		X	41702106	75702218	Mouse
1300702	Fcsa4_m	femoral cross-sectional area 4 (mouse)			Not determined		X	46027444	80027567	Mouse
1301212	Bw19_m	body weight QTL 19 (mouse)			Not determined		X	46376920	52412327	Mouse
4141630	Gct6_m	granulosa cell tumorigenesis 6 (mouse)			Not determined			47179121	129764756	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_004940413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004940414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_391673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BX572082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000240851

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	47,973,814 - 48,077,017 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000242610

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	47,973,846 - 48,083,674 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000242659

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	47,973,780 - 48,077,013 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000243876

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	47,973,826 - 48,083,674 (+)	Ensembl

RefSeq Acc Id:

XR_004940413

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	47,973,632 - 47,994,945 (+)	NCBI

Sequence:

show sequence

TGAAGGCATCTGCTTCATGGGCAGGCAGACGGTGGTTGTGTGGGGAAGTCTCAGATCCCCAGGT
GTGCAGTACCAGCAGACCACAGGAACCCGTGAAAGAATCAAGAGCGACCAAGAAGTGTCCCACA
AGTGTCTCCACTGATTTAGACAGCATAACAAAACTAAACTGAGAGAGTTGACAGGGAGGCAAAC
CAGGGAAGCAAGGGGATTTTACATCCAGGGCACGGCAGCCGAATAAACATCTGAAGATTGAATC
CTGGGCAAGAAATCTTAGATGAATGATAGCCACTGGCATTGTACTCAAGTGACATTTTCTGGAG
GCTGATTCCAGGATGCATTTTTGAAACCCGATGAGGGAAGAGAAACCCGGGGATCTTCATTTAT
TTAAAAGCTTAACTTAGAGGATAAGATCAGTGAACCAGTGCTGCTGCTGTTGAAGGAGAAGAAG
AGAAAGAAAGAAATTACCAAACTAACAGATGCTCCTTCTCACTAAATGAGACATTTCAATGAAA
AAAGAAGTTCACCCTTTAGCGTGAATATTGCACAGGCACTAAAGCAATGGGTTTCTCTGCAGCA
ATTCATGACTTTGATCTTCTGATTGATAATGTTCGTTGCCCATATATGGATTATAAATGCCCAC
CTGCTTCTCCTCTATCAGTGAACTGCAAGAACACTTGTATTCTGATGTTTGGTGTCCCAGAAGC
CCAGGAGTACATCATGGTATTGAAAAAGTGAAGTAGGTTATGTGCCAAAGCCTT

hide sequence

RefSeq Acc Id:

XR_004940414

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	47,973,632 - 47,994,945 (+)	NCBI

Sequence:

show sequence

TGAAGGCATCTGCTTCATGGGCAGGCAGACGGTGGTTGTGTGGGGAAGTCTCAGATCCCCAGGT
GTGCAGTACCAGCAGACCACAGGAACCCGTGAAAGAATCAAGAGCGACCAAGAAGTGTCCCACA
AGTGTCTCCACTGATTTAGACAGCATAACAAAACTAAACTGAGAGAGTTGACAGGGAGGCAAAC
CAGGGAAGCAAGGGGATTTTACATCCAGGGCACGGCAGCCGAATAAACATCTGAAGATTGAATC
CTGGGCAAGAAATCTTAGATGAATGATAGCCACTGGCATTGTACTCAAATGAGGGAAGAGAAAC
CCGGGGATCTTCATTTATTTAAAAGCTTAACTTAGAGGATAAGATCAGTGAACCAGTGCTGCTG
CTGTTGAAGGAGAAGAAGAGAAAGAAAGAAATTACCAAACTAACAGATGCTCCTTCTCACTAAA
TGAGACATTTCAATGAAAAAAGAAGTTCACCCTTTAGCGTGAATATTGCACAGGCACTAAAGCA
ATGGGTTTCTCTGCAGCAATTCATGACTTTGATCTTCTGATTGATAATGTTCGTTGCCCATATA
TGGATTATAAATGCCCACCTGCTTCTCCTCTATCAGTGAACTGCAAGAACACTTGTATTCTGAT
GTTTGGTGTCCCAGAAGCCCAGGAGTACATCATGGTATTGAAAAAGTGAAGTAGGTTATGTGCC
AAAGCCTT

hide sequence

RefSeq Acc Id:

XR_391673

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	47,973,804 - 47,994,945 (+)	NCBI
GRCm38	X	48,884,927 - 48,906,068 (+)	NCBI

Sequence:

show sequence

AGCTACCCTTGTTCATTTTGGTGGTCTTTTCCAGGAACCCGTGAAAGAATCAAGAGCGACCAAG
AAGTGTCCCACAAGTGTCTCCACTGATTTAGACAGCATAACAAAACTAAACTGAGAGAGTTGAC
AGGGAGGCAAACCAGGGAAGCAAGGGGATTTTACATCCAGGGCACGGCAGCCGAATAAACATCT
GAAGATTGAATCCTGGGCAAGAAATCTTAGATGAATGATAGCCACTGGCATTGTACTCAAGTGA
CATTTTCTGGAGGCTGATTCCAGGATGCATTTTTGAAACCCGGTTGGCAAGTTTCCCTGACTAT
GGCTTTGGCTGATCCTCCCCTACAAGCATAGCTTGATGTTACTGCACGCTACTTTGGTCTCTGC
TGATGAGGGAAGAGAAACCCGGGGATCTTCATTTATTTAAAAGCTTAACTTAGAGGATAAGATC
AGTGAACCAGTGCTGCTGCTGTTGAAGGAGAAGAAGAGAAAGAAAGAAATTACCAAACTAACAG
ATGCTCCTTCTCACTAAATGAGACATTTCAATGAAAAAAGAAGTTCACCCTTTAGCGTGAATAT
TGCACAGGCACTAAAGCAATGGGTTTCTCTGCAGCAATTCATGACTTTGATCTTCTGATTGATA
ATGTTCGTTGCCCATATATGGATTATAAATGCCCACCTGCTTCTCCTCTATCAGTGAACTGCAA
GAACACTTGTATTCTGATGTTTGGTGTCCCAGAAGCCCAGGAGTACATCATGGTATTGAAAAAG
TGAAGTAGGTTATGTGCCAAAGCCTT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000119964	Ensembl
MGD	MGI:5594266	ENTREZGENE
NCBI Gene	Gm35107	ENTREZGENE
PhenoGen	Gm35107	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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