Gm33858 (predicted gene, 33858) - Rat Genome Database

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Gene: Gm33858 (predicted gene, 33858) Mus musculus
Analyze
Symbol: Gm33858
Name: predicted gene, 33858
RGD ID: 9651838
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,892,328 - 119,900,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9119,898,062 - 119,899,688 (+)EnsemblGRCm39 Ensembl
GRCm389120,063,262 - 120,071,051 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,068,996 - 120,070,622 (+)EnsemblGRCm38mm10GRCm38
Celera9120,537,877 - 120,539,959 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm33858
240 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000216918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9119,898,062 - 119,899,688 (+)Ensembl
GRCm38.p6 Ensembl9120,068,996 - 120,070,622 (+)Ensembl
RefSeq Acc Id: XR_001779321
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,892,328 - 119,900,117 (+)NCBI
GRCm389120,063,262 - 120,071,051 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003948274
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,892,328 - 119,900,117 (+)NCBI
GRCm389120,063,262 - 120,071,051 (+)NCBI
Sequence:
Promoters
RGD ID:15093682
Promoter ID:EPDNEWNC_M1599
Type:single initiation site
Name:Gm33858_1
Description:predicted gene, 33858 [Source:MGI Symbol;Acc:MGI:5593017]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389120,068,978 - 120,069,038EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000111792 Ensembl
MGD MGI:5593017 ENTREZGENE
NCBI Gene Gm33858 ENTREZGENE
PhenoGen Gm33858 PhenoGen