Gm29788 (predicted gene, 29788) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm29788 (predicted gene, 29788) Mus musculus
Analyze
Symbol: Gm29788
Name: predicted gene, 29788
RGD ID: 9650346
MGI Page MGI
Description: ASSOCIATED WITH episodic ataxia type 1 (ortholog); genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); INTERACTS WITH aflatoxin B1 (ortholog); antirheumatic drug (ortholog); arsenite(3-) (ortholog)
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: INFERRED
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,769,412 - 126,787,607 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,769,412 - 126,787,607 (-)EnsemblGRCm39 Ensembl
GRCm386126,792,449 - 126,810,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,792,449 - 126,810,644 (-)EnsemblGRCm38mm10GRCm38
Celera6128,465,015 - 128,488,274 (-)NCBICelera
Cytogenetic Map6F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Gm29788
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,769,412 - 126,787,607 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,769,412 - 126,787,607 (-)EnsemblGRCm39 Ensembl
GRCm386126,792,449 - 126,810,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,792,449 - 126,810,644 (-)EnsemblGRCm38mm10GRCm38
Celera6128,465,015 - 128,488,274 (-)NCBICelera
Cytogenetic Map6F3NCBI
GALNT8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,720,400 - 4,772,726 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,720,400 - 4,851,927 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,829,566 - 4,881,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,700,013 - 4,752,153 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,700,012 - 4,752,153NCBI
Celera126,451,758 - 6,503,719 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,686,593 - 4,738,667 (+)NCBIHuRef
CHM1_1124,829,349 - 4,881,469 (+)NCBICHM1_1
T2T-CHM13v2.0124,727,222 - 4,779,711 (+)NCBIT2T-CHM13v2.0
Galnt8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,307,603 - 161,336,485 (-)NCBIGRCr8
mRatBN7.24159,626,438 - 159,650,327 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.04159,340,750 - 159,362,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera4148,344,913 - 148,366,518 (-)NCBICelera
Cytogenetic Map4q42NCBI
Galnt8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554132,510,123 - 2,566,842 (+)NCBIChiLan1.0ChiLan1.0
GALNT8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21010,261,833 - 10,399,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,258,570 - 10,328,383 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,837,719 - 4,894,120 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,758,570 - 4,813,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,758,570 - 4,810,085 (+)Ensemblpanpan1.1panPan2
GALNT8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,077,724 - 40,138,592 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,543,861 - 6,678,425 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,359,000 - 40,493,551 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,437,538 - 40,493,491 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,248,030 - 40,382,466 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,273,137 - 40,407,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,954,467 - 6,089,147 (+)NCBIUU_Cfam_GSD_1.0
Galnt8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,236,843 - 104,300,964 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366064,883,434 - 4,947,621 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,696,868 - 65,735,536 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,697,120 - 65,735,521 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,903,081 - 67,941,329 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,753,079 - 4,819,580 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,753,234 - 4,816,693 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,430,165 - 3,493,584 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248601,757,201 - 1,806,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gm29788
609 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
4141611Btts_mbitterness tasting (mouse)Not determined6125333609134096586Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_034094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000238440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6126,776,720 - 126,781,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6126,769,412 - 126,787,607 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000118420 Ensembl, ENTREZGENE
MGD MGI:5588947 ENTREZGENE
NCBI Gene Gm29788 ENTREZGENE
PhenoGen Gm29788 PhenoGen