Gm32461 (predicted gene, 32461) - Rat Genome Database

Name: Gm32461
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm32461 (predicted gene, 32461) Mus musculus

Analyze

Symbol:

Gm32461

Name:

predicted gene, 32461

RGD ID:

9636052

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	86,566,814 - 86,603,401 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	86,566,936 - 86,605,751 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	86,769,926 - 86,806,513 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	86,770,227 - 86,806,513 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	16	87,012,002 - 87,046,054 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm32461
1266 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
1301394	Eae11_m	susceptibility to experimental allergic encephalomyelitis 11 (mouse)			Not determined		16	53561891	87562035	Mouse
1301364	Lith14_m	lithogenic gene 14 (mouse)			Not determined		16	55661846	89661961	Mouse
1301125	Sluc27_m	susceptibility to lung cancer 27 (mouse)			Not determined		16	61608644	95608764	Mouse
4141113	Tgq28_m	triglyceride QTL 28 (mouse)			Not determined			62986646	96986646	Mouse
1300928	Etia_m	ethanol induced activation (mouse)			Not determined		16	63313907	97314016	Mouse
1558740	Bpq9_m	blood pressure QTL 9 (mouse)			Not determined		16	63327336	97327472	Mouse
1302194	Pgia10_m	proteoglycan induced arthritis 10 (mouse)			Not determined		16	68600722	98008968	Mouse
1301032	Tauph_m	tau phosphorylation (mouse)			Not determined		16	69076132	98008968	Mouse
11049573	Lmr18b_m	leishmaniasis resistance 18b (mouse)					16	69127611	98008968	Mouse
11049574	Lmr18a_m	leishmaniasis resistance 18a (mouse)					16	69127611	98008968	Mouse
4142262	Lmr18_m	leishmaniasis resistance 18 (mouse)			Not determined		16	69127611	98008968	Mouse
11522753	Cocia19_m	cocaine-induced activity, QTL 19 (mouse)					16	69254482	98008968	Mouse
1301598	Renf2_m	renal failure 2 (mouse)			Not determined		16	70380252	98008968	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_153789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC135964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI956270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000231875

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,115 - 86,603,401 (-)	Ensembl
GRCm38.p6 Ensembl	16	86,770,227 - 86,806,513 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000232333

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,167 - 86,603,252 (-)	Ensembl
GRCm38.p6 Ensembl	16	86,770,283 - 86,806,364 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000240934

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,118 - 86,602,414 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000241997

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,114 - 86,605,709 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242476

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,114 - 86,605,702 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242799

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,114 - 86,605,708 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242927

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,566,936 - 86,605,751 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243929

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,114 - 86,605,712 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244254

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,605,159 - 86,605,706 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244423

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,114 - 86,605,747 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000245169

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	86,567,118 - 86,605,709 (-)	Ensembl

RefSeq Acc Id:

NR_153789

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	86,566,814 - 86,603,401 (-)	NCBI
GRCm38	16	86,769,926 - 86,806,513 (-)	NCBI

Sequence:

show sequence

AAAGTTCTGTTAACCTTGGTGGAAGGAGCCGGGAGGCCTCTGGATGGGAATAGCTCCCATTTCT
GAGAGGACTCATCACACCTAATTTGAGTAATTTCCTTTTCAATTTCCTGGGCCATTTTATTTTA
CCTCTGGCTGCCCCTTGGATGAGTGTACCAGCTGTCAACTTGATACAGGCTGGAGTCATCTAAG
GAAAGCCTTGATGTAAAGATTGTCTAGATCAGATTGGCCTGTGGACTTTTCTGAGGACGTTATC
TTGATTATGAACTAATGCAGACAGTTCTTTGTGCGCAGCAGCAGTCCCTGGGAAGATGGTCCTG
AGTTGTATAAGAAAGTTAGCAGTTTCCTTTGCTGTGATAAAACACCATCCCAAAAGCAACTAGG
AGAGAAGGGTGTGTGTCATCTTACAGCTTGTAAACCATCATCCAGGAAAGGCAGGGAAGGAACT
CAAGGCAGGTACCTAGAGAAAGCACTTGAAGCAATTAGAAGATTGAATCATTACCACTGCTGGG
TTGATAATCATTTCTCAGGCTGTCTTTTGGCAAAGAGCAAGCTACATTTTACATTGCTTGAGTC
ACAATGGTCAGTCTTCTCAAACGGAAGACTTCAAGGAAAAAGAAACTTGGAGTAAGATGAAAGA
AGAAAGAGGAAAGACAAGAAATCAAGAACTCCAAAGGTCACAAGGCAGGAACATAAGAAAAGAA
ATAAAATTTTTCTCTTTGTATTAAAATTTTTAATATTATAATGTAATAATTATACTATAAATAT
CAGGGAACATCTCTATTGTCAGCCTCGTCTTTTTGGTGGGCATGTGAGTTGTCAAAAGATCAGC
TTCCATACTGGGCAATGCATTATGGCTTACATAAAGTTTTATTTATGTAGAAAATACTCTGTTA
AGTATTGCAGTATGGAAGGCTTATTACTGATGGGTCAAGAATAAAACTGATCCCCAATATGGAA
ATCAGTATAGCAATTCTTTAGAAAATTAAAATAACTACAATATGATCCAAATAAGTGTTTAACT
GAAAGATGCCCAGTGAATGAATCACACAGATAACTGCATAATATTTCCACTGAACCACT

hide sequence

Promoters

RGD ID:

15094724

Promoter ID:

EPDNEWNC_M2627

Type:

single initiation site

Name:

Gm32461_1

Description:

predicted gene, 32461 [Source:MGI Symbol;Acc:MGI:5591620]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	86,806,514 - 86,806,574	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000116993	Ensembl
MGD	MGI:5591620	ENTREZGENE
NCBI Gene	Gm32461	ENTREZGENE
PhenoGen	Gm32461	PhenoGen
RNAcentral	URS0000CCE12B	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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