Gm36210 (predicted gene, 36210) - Rat Genome Database

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Gene: Gm36210 (predicted gene, 36210) Mus musculus
Analyze
Symbol: Gm36210
Name: predicted gene, 36210
RGD ID: 9610361
MGI Page MGI
Description: Orthologous to human C19orf85 (chromosome 19 open reading frame 85).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein C19orf85 homolog; uncharacterized protein Gm36210; uncharacterized protein LOC102640043
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,899,945 - 4,910,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,901,449 - 4,909,515 (-)EnsemblGRCm39 Ensembl
GRCm3874,896,946 - 4,907,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,898,450 - 4,906,516 (-)EnsemblGRCm38mm10GRCm38
Celera74,639,717 - 4,649,386 (-)NCBICelera
Cytogenetic Map7A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ethylparaben  (ISO)

References
Additional References at PubMed
PMID:14610273   PMID:17062627   PMID:18799693  


Genomics

Comparative Map Data
Gm36210
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,899,945 - 4,910,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,901,449 - 4,909,515 (-)EnsemblGRCm39 Ensembl
GRCm3874,896,946 - 4,907,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,898,450 - 4,906,516 (-)EnsemblGRCm38mm10GRCm38
Celera74,639,717 - 4,649,386 (-)NCBICelera
Cytogenetic Map7A1NCBI
C19orf85
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,463,001 - 55,464,751 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,463,001 - 55,464,751 (-)EnsemblGRCh38hg38GRCh38
GRCh371955,974,368 - 55,976,118 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q13.42NCBI
T2T-CHM13v2.01958,559,160 - 58,560,910 (-)NCBIT2T-CHM13v2.0
C1h19orf85
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8177,958,015 - 77,965,948 (+)NCBIGRCr8
mRatBN7.2168,929,184 - 68,937,113 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,929,333 - 68,936,922 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,274,247 - 74,282,176 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,838,554 - 82,846,483 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,987,358 - 75,995,241 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,480,610 - 72,488,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0176,047,817 - 76,055,310 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera168,185,646 - 68,190,388 (-)NCBICelera
Cytogenetic Map1q12NCBI
C20H19orf85
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,603,464 - 61,605,214 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,331,977 - 63,333,727 (-)NCBINHGRI_mPanPan1
C1H19orf85
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,239,726 - 102,245,904 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,239,848 - 102,245,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,294,363 - 102,302,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01102,890,835 - 102,899,011 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,892,882 - 102,898,484 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,528,043 - 102,536,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,240,105 - 102,248,327 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,003,381 - 103,011,558 (+)NCBIUU_Cfam_GSD_1.0
CUNH19orf85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,861,555 - 1,869,615 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886690,056 - 697,237 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
CUNH19orf85
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,059,877 - 48,062,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045708,678 - 709,951 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Gm36210
448 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001370858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000210663   ⟹   ENSMUSP00000147734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,901,449 - 4,909,515 (-)Ensembl
GRCm38.p6 Ensembl74,898,450 - 4,906,516 (-)Ensembl
RefSeq Acc Id: NM_001370858   ⟹   NP_001357787
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,899,945 - 4,910,716 (-)NCBI
GRCm3874,896,946 - 4,907,717 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001357787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000147734
  ENSMUSP00000147734.2
Reference Protein Sequences
RefSeq Acc Id: NP_001357787   ⟸   NM_001370858
- UniProtKB: A0A1B0GS00 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000147734   ⟸   ENSMUST00000210663

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GS00-F1-model_v2 AlphaFold A0A1B0GS00 1-229 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5595369 AgrOrtholog
Ensembl Genes ENSMUSG00000110221 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000210663 ENTREZGENE
  ENSMUST00000210663.2 UniProtKB/TrEMBL
MGD MGI:5595369 ENTREZGENE
NCBI Gene Gm36210 ENTREZGENE
PhenoGen Gm36210 PhenoGen
UniProt A0A1B0GS00 ENTREZGENE, UniProtKB/TrEMBL