Mir5627 (microRNA 5627) - Rat Genome Database

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Gene: Mir5627 (microRNA 5627) Mus musculus
Analyze
Symbol: Mir5627
Name: microRNA 5627
RGD ID: 9598426
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm23684; mir-5627; mmu-mir-5627
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,257,096 - 44,257,156 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1244,257,096 - 44,257,156 (+)EnsemblGRCm39 Ensembl
GRCm381244,210,313 - 44,210,373 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,210,313 - 44,210,373 (+)EnsemblGRCm38mm10GRCm38
Celera1245,580,421 - 45,580,481 (+)NCBICelera
Cytogenetic Map12B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:21037258   PMID:21911355  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:41538
Count of gene targets:15201
Count of transcripts:28924
Interacting mature miRNAs:mmu-miR-5627-3p, mmu-miR-5627-5p
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
13524845Ppiq8a_mprepulse inhibition QTL 8a (mouse)124032341244945796Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1244,257,096 - 44,257,156 (+)Ensembl
GRCm38.p6 Ensembl1244,210,313 - 44,210,373 (+)Ensembl
RefSeq Acc Id: NR_049203
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,257,096 - 44,257,156 (+)NCBI
GRCm381244,210,313 - 44,210,373 (+)NCBI
Celera1245,580,421 - 45,580,481 (+)NCBI
Sequence:
Promoters
RGD ID:8678210
Promoter ID:EPDNEW_M17135
Type:multiple initiation site
Name:Mir5627_1
Description:Mus musculus microRNA 5627 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381244,210,384 - 44,210,444EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093618 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000177238 ENTREZGENE
MGD MGI:5453461 ENTREZGENE
miRBase MI0019198 ENTREZGENE
NCBI Gene Mir5627 ENTREZGENE
PhenoGen Mir5627 PhenoGen
RNAcentral URS00002E4785 RNACentral
  URS000075A438 RNACentral
  URS000075BF4F RNACentral