Gene: LINC01264 (long intergenic non-protein coding RNA 1264) Homo sapiens
Analyze
Symbol:
LINC01264
Name:
long intergenic non-protein coding RNA 1264
RGD ID:
9588399
HGNC Page
HGNC:50282
Description:
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 42,979,017 - 42,981,507 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 42,979,017 - 42,981,507 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 43,474,465 - 43,476,955 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 10 q11.21 NCBI CHM1_1 10 43,513,663 - 43,516,153 (-) NCBI CHM1_1 T2T-CHM13v2.0 10 43,856,483 - 43,858,973 (-) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 41 Count of miRNA genes: 27 Interacting mature miRNAs: 28 Transcripts: ENST00000431395 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
adipose tissue
appendage
High
Medium
2
Low
3
16
2
8
2
2
3
19
2
158
10
1
2
2
Below cutoff
299
60
175
63
69
12
232
111
338
21
297
187
51
64
132
Sequence
RefSeq Acc Id:
ENST00000431395
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 10 42,979,017 - 42,981,507 (-) Ensembl
RefSeq Acc Id:
NR_126352
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 10 42,979,017 - 42,981,507 (-) NCBI CHM1_1 10 43,513,663 - 43,516,153 (-) NCBI T2T-CHM13v2.0 10 43,856,483 - 43,858,973 (-) NCBI
Sequence:
TGAGGTCAGACGGGCCCTTGGGCTCCCGGGCAGGAGCACCCGGCCTCCCAGCTCCAGAAGCTGC GCCTCCTCCAGCTCGCCTGCCCCCACGCTGCCCAGTGACTCTCAGGAGGAGAGGAGCTGATGTT CCTGCACCCATGATGAGGAAATCAAGACTCGGAATGTCCTGGTCCCTTTCCACAAGGCCTCGCC TTATCCGCTCCCACAAAGGGCTTACCTCTTCAGGAGGATCTGGCCCCATGGTCAGAGAAGTGAG TGAATATCAGCTGTGGGGCACCCAGAGCAGTTGCCATCTTCTGCTCTGTCTAGCCTGGGAGTCC TGGAAGGAGACTGCAGCCTGAGTGCCTCCCGAGCCAGCTCCTCTCCAGGACATCACCTTGGCCC CTGGGTGTCCCAACAGACAGTCAGCACACAAAGGTTACCTGATGCCCAGGTAGGAACTGCAGCT ATTTTTAAACTGAGATTTCCTACAAATTAAAATTGCTTTGAGTATGTGTGAA
hide sequence
Promoters
RGD ID: 15096396
Promoter ID: EPDNEWNC_H1236
Type: initiation region
Name: LINC01264_1
Description: long intergenic non-protein coding RNA 1264 [Source:HGNCSymbol;Acc:HGNC:50282]
SO ACC ID: SO:0000170
Source: EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.; Paired-end sequencing.
Position: Human Assembly Chr Position (strand) Source GRCh38 10 42,981,500 - 42,981,560 EPDNEWNC
Additional Information