BCL9P1 (BCL9 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: BCL9P1 (BCL9 pseudogene 1) Homo sapiens
Analyze
Symbol: BCL9P1
Name: BCL9 pseudogene 1
RGD ID: 9587190
HGNC Page HGNC:51328
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: B cell CLL/lymphoma 9 pseudogene 1; B-cell CLL/lymphoma 9 pseudogene 1
Related Functional Gene: BCL9  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38567,636,953 - 67,638,654 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl567,636,382 - 67,638,942 (+)EnsemblGRCh38hg38GRCh38
GRCh37566,932,781 - 66,934,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera563,930,373 - 63,932,933 (+)NCBICelera
Cytogenetic Map5q13.1NCBI
HuRef563,890,663 - 63,893,223 (+)NCBIHuRef
CHM1_1566,932,536 - 66,935,096 (+)NCBICHM1_1
T2T-CHM13v2.0568,459,170 - 68,460,871 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:101
Interacting mature miRNAs:101
Transcripts:ENST00000506012
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 27 17 6 5 6 331 283 1 5 18 7 323
Below cutoff 956 958 564 156 229 70 2544 1022 715 44 660 827 86 696 1689

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000506012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl567,636,382 - 67,638,942 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BCL9P1 COSMIC
Ensembl Genes ENSG00000249238 Ensembl
GTEx ENSG00000249238 GTEx
HGNC ID HGNC:51328 ENTREZGENE
Human Proteome Map BCL9P1 Human Proteome Map
NCBI Gene BCL9P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 BCL9P1  BCL9 pseudogene 1    B cell CLL/lymphoma 9 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2017-12-19 BCL9P1  B cell CLL/lymphoma 9 pseudogene 1    B-cell CLL/lymphoma 9 pseudogene 1  Symbol and/or name change 5135510 APPROVED