ARMCX7P (armadillo repeat containing X-linked 7, pseudogene) - Rat Genome Database

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Gene: ARMCX7P (armadillo repeat containing X-linked 7, pseudogene) Homo sapiens
Analyze
Symbol: ARMCX7P
Name: armadillo repeat containing X-linked 7, pseudogene
RGD ID: 9586338
HGNC Page HGNC:49917
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: armadillo repeat containing, X-linked 7, pseudogene; ARMCX6-ps; GASP10ps
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: ARMCX6  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,597,480 - 101,598,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,597,510 - 101,598,071 (+)EnsemblGRCh38hg38GRCh38
GRCh37X100,852,458 - 100,853,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,739,103 - 100,740,305 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX101,371,841 - 101,372,511 (+)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,660,163 - 90,660,860 (+)NCBIHuRef
CHM1_1X100,746,194 - 100,746,891 (+)NCBICHM1_1
T2T-CHM13v2.0X100,042,101 - 100,042,889 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16221301   PMID:22569362  


Genomics

Comparative Map Data
ARMCX7P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,597,480 - 101,598,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,597,510 - 101,598,071 (+)EnsemblGRCh38hg38GRCh38
GRCh37X100,852,458 - 100,853,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,739,103 - 100,740,305 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX101,371,841 - 101,372,511 (+)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,660,163 - 90,660,860 (+)NCBIHuRef
CHM1_1X100,746,194 - 100,746,891 (+)NCBICHM1_1
T2T-CHM13v2.0X100,042,101 - 100,042,889 (+)NCBIT2T-CHM13v2.0
Armcx7-ps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,632,243 - 133,633,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,632,320 - 133,632,813 (+)EnsemblGRCm39 Ensembl
GRCm38X134,731,494 - 134,732,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,731,571 - 134,732,064 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X131,266,033 - 131,267,321 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X131,266,034 - 131,267,322 (+)NCBIMGSCv36mm8
CeleraX117,612,661 - 117,613,949 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.25NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:341
Count of miRNA genes:294
Interacting mature miRNAs:316
Transcripts:ENST00000372828, ENST00000602449
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 85 147 125 3 39 1 135 31 98 4 86 101 2 37 123
Below cutoff 1291 1596 973 242 670 137 2243 964 2126 199 761 885 105 738 1436

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000372828
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX101,597,510 - 101,598,071 (+)Ensembl
RefSeq Acc Id: ENST00000602449
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX101,598,017 - 101,598,671 (+)Ensembl

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:49917 AgrOrtholog
COSMIC ARMCX7P COSMIC
Ensembl Genes ENSG00000204072 Ensembl
GTEx ENSG00000204072 GTEx
HGNC ID HGNC:49917 ENTREZGENE
Human Proteome Map ARMCX7P Human Proteome Map
NCBI Gene ARMCX7P ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 ARMCX7P  armadillo repeat containing X-linked 7, pseudogene    armadillo repeat containing, X-linked 7, pseudogene  Symbol and/or name change 5135510 APPROVED