Gene: Clba1 (clathrin binding box of aftiphilin containing 1) Chinchilla lanigera
Analyze
Symbol:
Clba1
Name:
clathrin binding box of aftiphilin containing 1
RGD ID:
9056069
Description:
ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
chromosome unknown open reading frame, human C14orf79; clathrin binding box of aftiphilin containing; LOC102030237; uncharacterized protein C14orf79 homolog
RGD Orthologs
Alliance Genes
More Info
more info ...
More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955538 3,333,957 - 3,341,256 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955538 3,325,052 - 3,340,534 (+) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Disease Annotations - ClinVar
References
Additional References at PubMed
Genomics
Comparative Map Data
Clba1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955538 3,333,957 - 3,341,256 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955538 3,325,052 - 3,340,534 (+) NCBI ChiLan1.0 ChiLan1.0
CLBA1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 14 104,985,788 - 105,001,274 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 14 104,985,775 - 105,010,482 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 14 105,452,125 - 105,461,853 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 14 104,523,661 - 104,532,900 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 14 104,526,537 - 104,532,900 NCBI Celera 14 85,506,829 - 85,516,068 (+) NCBI Celera Cytogenetic Map 14 q32.33 NCBI HuRef 14 85,646,461 - 85,655,693 (+) NCBI HuRef CHM1_1 14 105,390,377 - 105,399,616 (+) NCBI CHM1_1 T2T-CHM13v2.0 14 99,230,266 - 99,245,748 (+) NCBI T2T-CHM13v2.0
Clba1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 12 112,772,595 - 112,779,865 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 12 112,772,557 - 112,779,872 (+) Ensembl GRCm39 Ensembl GRCm38 12 112,808,975 - 112,816,245 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 12 112,808,937 - 112,816,252 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 12 114,047,186 - 114,054,456 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 12 113,256,783 - 113,264,053 (+) NCBI MGSCv36 mm8 Celera 12 114,017,579 - 114,024,842 (+) NCBI Celera Cytogenetic Map 12 F1 NCBI cM Map 12 61.2 NCBI
Clba1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 6 137,703,947 - 137,710,743 (+) NCBI GRCr8 mRatBN7.2 6 131,882,866 - 131,889,662 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 6 131,882,609 - 131,889,662 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 6 132,052,761 - 132,059,557 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 6 132,342,975 - 132,349,889 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 6 131,717,251 - 131,724,151 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 6 137,386,694 - 137,393,490 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 6 137,386,422 - 137,393,506 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 6 146,389,788 - 146,396,584 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 6 137,809,373 - 137,816,169 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 6 137,815,559 - 137,822,355 (+) NCBI Celera 6 129,422,066 - 129,428,862 (+) NCBI Celera Cytogenetic Map 6 q32 NCBI
CLBA1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 15 106,167,242 - 106,188,879 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 14 105,386,674 - 105,397,168 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 14 85,634,349 - 85,649,411 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 14 105,419,840 - 105,429,263 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 14 105,419,834 - 105,441,870 (+) Ensembl panpan1.1 panPan2
CLBA1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 8 72,448,580 - 72,454,685 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 8 72,443,323 - 72,454,191 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 8 71,959,132 - 71,967,232 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 8 72,734,778 - 72,742,877 (+) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 8 72,417,326 - 72,423,576 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 8 72,461,885 - 72,468,127 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 8 72,855,875 - 72,863,973 (+) NCBI UU_Cfam_GSD_1.0
Clba1
CLBA1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa10.2 7 131,256,197 - 131,260,838 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CLBA1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 24 82,905,148 - 82,918,368 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 24 82,905,218 - 82,916,861 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666053 70,337,315 - 70,350,265 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Clba1
Expression
Sequence
RefSeq Acc Id:
ENSCLAT00000007083 ⟹ ENSCLAP00000006971
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955538 3,333,957 - 3,341,256 (+) Ensembl
RefSeq Acc Id:
XM_005410851 ⟹ XP_005410908
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955538 3,332,005 - 3,340,534 (+) NCBI
Sequence:
CTGCCTCAGGGTTCCAAGTGCTGGAATTCAGGCGTGTCCCACCACGCCCAGCCTGTTTCCTTCT
hide sequence
RefSeq Acc Id:
XM_005410852 ⟹ XP_005410909
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955538 3,332,000 - 3,339,286 (+) NCBI
Sequence:
TCCTCCTGCCTCAGGGTTCCAAGTGCTGGAATTCAGGCGTGTCCCACCACGCCCAGCCTGTTTC
hide sequence
RefSeq Acc Id:
XM_013507884 ⟹ XP_013363338
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955538 3,332,005 - 3,340,534 (+) NCBI
Sequence:
CTGCCTCAGGGTTCCAAGTGCTGGAATTCAGGCGTGTCCCACCACGCCCAGCCTGTTTCCTTCT
hide sequence
RefSeq Acc Id:
XM_013507885 ⟹ XP_013363339
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955538 3,331,999 - 3,339,672 (+) NCBI
Sequence:
ATCCTCCTGCCTCAGGGTTCCAAGTGCTGGAATTCAGGCGTGTCCCACCACGCCCAGCCTGTTT
hide sequence
RefSeq Acc Id:
XM_013507887 ⟹ XP_013363341
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955538 3,325,052 - 3,340,534 (+) NCBI
Sequence:
AGAACCCGCCTCAGTGGGGACAGGGTAACCTCTGGGGCCCCCTCCTCAGTGTCCATCCTCACCT
hide sequence
RefSeq Acc Id:
XP_005410908 ⟸ XM_005410851
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2YL98 (UniProtKB/TrEMBL)
- Sequence:
MQGQEELTRESVHDAGEPGEVSLHQVAGGQSGDSLERVGTCCNNRLLDGKASSCGGEGLPSGTA
hide sequence
RefSeq Acc Id:
XP_005410909 ⟸ XM_005410852
- Peptide Label:
isoform X3
- Sequence:
MQGQEELTRESVHDAGEPGEVSLHQVAGGQSGDSLERVGTCCNNRLLDGKASSCGGEGLPSGTA
hide sequence
RefSeq Acc Id:
XP_013363341 ⟸ XM_013507887
- Peptide Label:
isoform X4
- Sequence:
MRLPAWCHHQEPYVRVHALGSLPLGRSWRPSIGRVPLQHRRLPAQAMLRTATRGQPPQSRPGVE
hide sequence
RefSeq Acc Id:
XP_013363339 ⟸ XM_013507885
- Peptide Label:
isoform X2
- Sequence:
MQGQEELTRESVHDAGEPGEVSLHQVAGGQSGDSLERVGTCCNNRLLDGKASSCGGEGLPSGTA
hide sequence
RefSeq Acc Id:
XP_013363338 ⟸ XM_013507884
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2YL98 (UniProtKB/TrEMBL)
- Sequence:
MQGQEELTRESVHDAGEPGEVSLHQVAGGQSGDSLERVGTCCNNRLLDGKASSCGGEGLPSGTA
hide sequence
RefSeq Acc Id:
ENSCLAP00000006971 ⟸ ENSCLAT00000007083
Additional Information
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2017-07-25
Clba1
clathrin binding box of aftiphilin containing 1
clathrin binding box of aftiphilin containing
Symbol and/or name change
5135510 APPROVED
2017-07-04
Clba1
clathrin binding box of aftiphilin containing
LOC102030237
chromosome unknown open reading frame, human C14orf79
Symbol and/or name change
5135510 APPROVED
