Rcan2 (regulator of calcineurin 2) - Rat Genome Database

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Gene: Rcan2 (regulator of calcineurin 2) Chinchilla lanigera
Analyze
Symbol: Rcan2
Name: regulator of calcineurin 2
RGD ID: 9042883
Description: INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); locomotion involved in locomotory behavior (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcipressin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,243,143 - 11,405,795 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543711,243,195 - 11,406,488 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rcan2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,243,143 - 11,405,795 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543711,243,195 - 11,406,488 (-)NCBIChiLan1.0ChiLan1.0
RCAN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38646,220,736 - 46,491,970 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl646,220,736 - 46,491,972 (-)EnsemblGRCh38hg38GRCh38
GRCh37646,188,473 - 46,459,707 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36646,296,428 - 46,401,490 (-)NCBINCBI36Build 36hg18NCBI36
Build 34646,296,433 - 46,401,364NCBI
Celera647,741,020 - 47,846,061 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef645,911,564 - 46,182,793 (-)NCBIHuRef
CHM1_1646,191,709 - 46,463,038 (-)NCBICHM1_1
T2T-CHM13v2.0646,055,860 - 46,329,613 (-)NCBIT2T-CHM13v2.0
Rcan2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391744,112,243 - 44,350,407 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1744,112,242 - 44,350,407 (+)EnsemblGRCm39 Ensembl
GRCm381743,801,352 - 44,039,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1743,801,351 - 44,039,516 (+)EnsemblGRCm38mm10GRCm38
MGSCv371743,938,800 - 44,176,465 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361743,264,906 - 43,502,571 (+)NCBIMGSCv36mm8
Celera1747,226,766 - 47,458,244 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1719.77NCBI
Rcan2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8924,456,861 - 24,674,234 (-)NCBIGRCr8
mRatBN7.2916,959,478 - 17,174,823 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl916,959,480 - 17,174,856 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx925,543,367 - 25,758,360 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0930,617,888 - 30,832,887 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0928,907,100 - 29,122,117 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0919,518,568 - 19,749,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl919,518,558 - 19,749,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0918,397,065 - 18,626,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4912,623,121 - 12,853,302 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1912,620,444 - 12,850,624 (-)NCBI
Celera914,685,543 - 14,899,643 (-)NCBICelera
Cytogenetic Map9q13NCBI
RCAN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2560,713,940 - 60,987,123 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1656,580,011 - 56,853,215 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0645,801,389 - 46,074,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1647,074,850 - 47,347,556 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl647,074,850 - 47,312,149 (-)Ensemblpanpan1.1panPan2
RCAN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11214,427,095 - 14,647,327 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1214,428,406 - 14,687,241 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1214,458,631 - 14,718,983 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01214,927,188 - 15,187,200 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1214,927,180 - 15,187,355 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11214,442,961 - 14,703,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01214,531,756 - 14,791,823 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01214,628,322 - 14,888,571 (-)NCBIUU_Cfam_GSD_1.0
Rcan2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494649,849,314 - 50,090,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647613,915,701 - 14,110,891 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647613,869,797 - 14,110,892 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCAN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl740,980,527 - 41,282,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1740,979,814 - 41,282,869 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2747,364,244 - 47,451,587 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RCAN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11725,775,137 - 26,034,443 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1725,939,629 - 26,034,448 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604446,223,466 - 46,511,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcan2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475414,086,096 - 14,250,567 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475414,086,947 - 14,250,473 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015963   ⟹   ENSCLAP00000015800
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543711,243,143 - 11,405,795 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015964   ⟹   ENSCLAP00000015801
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543711,243,143 - 11,301,249 (-)Ensembl
RefSeq Acc Id: XM_005389848   ⟹   XP_005389905
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543711,243,195 - 11,406,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005389850   ⟹   XP_005389907
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543711,243,195 - 11,405,448 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005389852   ⟹   XP_005389909
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543711,243,195 - 11,405,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005389853   ⟹   XP_005389910
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543711,243,195 - 11,405,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005389854   ⟹   XP_005389911
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543711,243,195 - 11,406,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005389855   ⟹   XP_005389912
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543711,243,195 - 11,300,979 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005389911   ⟸   XM_005389854
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VJZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389905   ⟸   XM_005389848
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VJZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389907   ⟸   XM_005389850
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VJZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389910   ⟸   XM_005389853
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VJZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389909   ⟸   XM_005389852
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VJZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389912   ⟸   XM_005389855
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015801   ⟸   ENSCLAT00000015964
RefSeq Acc Id: ENSCLAP00000015800   ⟸   ENSCLAT00000015963


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015963 ENTREZGENE
  ENSCLAT00000015963.1 UniProtKB/TrEMBL
  ENSCLAT00000015964 ENTREZGENE
  ENSCLAT00000015964.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Calcipressin UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RCAN2_RRM UniProtKB/TrEMBL
NCBI Gene Rcan2 ENTREZGENE
PANTHER PTHR10300 UniProtKB/TrEMBL
  PTHR10300:SF5 UniProtKB/TrEMBL
Pfam Calcipressin UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2VJZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VN75 ENTREZGENE, UniProtKB/TrEMBL