LOC102006600 (ATP-binding cassette sub-family G member 2-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC102006600 (ATP-binding cassette sub-family G member 2-like) Chinchilla lanigera
Analyze
Symbol: LOC102006600
Name: ATP-binding cassette sub-family G member 2-like
RGD ID: 9019318
Description:
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955433125,610 - 276,438 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013516145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001234729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001234730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001234731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001234732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01031303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01134192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013516145   ⟹   XP_013371599
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433125,610 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516146   ⟹   XP_013371600
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433125,610 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516147   ⟹   XP_013371601
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433125,610 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516148   ⟹   XP_013371602
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516149   ⟹   XP_013371603
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516150   ⟹   XP_013371604
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 272,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516151   ⟹   XP_013371605
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 272,259 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516152   ⟹   XP_013371606
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 272,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516153   ⟹   XP_013371607
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516154   ⟹   XP_013371608
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 270,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516155   ⟹   XP_013371609
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 258,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516156   ⟹   XP_013371610
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 258,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516157   ⟹   XP_013371611
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 263,338 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516158   ⟹   XP_013371612
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 270,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516159   ⟹   XP_013371613
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 251,295 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516160   ⟹   XP_013371614
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 189,184 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516161   ⟹   XP_013371615
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433229,522 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516162   ⟹   XP_013371616
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433229,522 - 276,438 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001234729
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 274,312 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001234730
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 270,692 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001234731
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 272,259 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001234732
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955433126,621 - 270,570 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013371600   ⟸   XM_013516146
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013371599   ⟸   XM_013516145
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371601   ⟸   XM_013516147
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013371602   ⟸   XM_013516148
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013371607   ⟸   XM_013516153
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_013371603   ⟸   XM_013516149
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371604   ⟸   XM_013516150
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013371606   ⟸   XM_013516152
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013371605   ⟸   XM_013516151
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013371608   ⟸   XM_013516154
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_013371612   ⟸   XM_013516158
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_013371611   ⟸   XM_013516157
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_013371609   ⟸   XM_013516155
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_013371610   ⟸   XM_013516156
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_013371613   ⟸   XM_013516159
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_013371614   ⟸   XM_013516160
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_013371616   ⟸   XM_013516162
- Peptide Label: isoform X15
- UniProtKB: A0A8C2V340 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371615   ⟸   XM_013516161
- Peptide Label: isoform X15
- UniProtKB: A0A8C2V340 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006036 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008750 ENTREZGENE
  ENSCLAT00000008750.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC_2_trans UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABCG_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC102006600 ENTREZGENE
PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 UniProtKB/TrEMBL
  BROAD SUBSTRATE SPECIFICITY ATP-BINDING CASSETTE TRANSPORTER ABCG2 UniProtKB/TrEMBL
Pfam ABC2_membrane UniProtKB/TrEMBL
  ABC2_membrane_7 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2V340 ENTREZGENE, UniProtKB/TrEMBL