Bloc1s3 (biogenesis of lysosomal organelles complex 1 subunit 3) - Rat Genome Database

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Gene: Bloc1s3 (biogenesis of lysosomal organelles complex 1 subunit 3) Chinchilla lanigera
Analyze
Symbol: Bloc1s3
Name: biogenesis of lysosomal organelles complex 1 subunit 3
RGD ID: 9012088
Description: ENCODES a protein that exhibits protein transmembrane transporter activity (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); blood coagulation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hermansky-Pudlak syndrome (ortholog); Hermansky-Pudlak syndrome 8 (ortholog); FOUND IN BLOC-1 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: biogenesis of lysosomal organelles complex-1, subunit 3; biogenesis of lysosome-related organelles complex 1 subunit 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,184,490 - 2,185,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,183,752 - 2,186,154 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bloc1s3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,184,490 - 2,185,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,183,752 - 2,186,154 (+)NCBIChiLan1.0ChiLan1.0
BLOC1S3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,178,784 - 45,217,083 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,178,784 - 45,216,933 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,682,042 - 45,685,058 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,373,891 - 50,375,003 (+)NCBINCBI36Build 36hg18NCBI36
Build 341950,374,394 - 50,375,003NCBI
Celera1942,486,265 - 42,489,320 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,112,149 - 42,115,204 (+)NCBIHuRef
CHM1_11945,685,293 - 45,688,348 (+)NCBICHM1_1
T2T-CHM13v2.01948,003,901 - 48,043,728 (+)NCBIT2T-CHM13v2.0
Bloc1s3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,239,708 - 19,242,295 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,238,411 - 19,242,292 (-)EnsemblGRCm39 Ensembl
GRCm38719,505,783 - 19,508,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,504,486 - 19,508,367 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,091,153 - 20,093,680 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,664,326 - 18,666,853 (-)NCBIMGSCv36mm8
Celera716,911,731 - 16,914,258 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.92NCBI
Bloc1s3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,283,864 - 88,286,244 (-)NCBIGRCr8
mRatBN7.2179,155,873 - 79,158,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,155,693 - 79,158,505 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,544,282 - 84,546,657 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,102,358 - 93,104,733 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,299,386 - 86,301,761 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,414,766 - 80,417,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,415,686 - 80,416,273 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,680,787 - 81,683,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,859,459 - 78,861,218 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,615,424 - 73,618,043 (-)NCBICelera
Cytogenetic Map1q21NCBI
BLOC1S3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,312,338 - 51,340,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,184,333 - 53,212,207 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,100,227 - 42,128,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BLOC1S3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,325,351 - 110,328,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,326,843 - 110,327,442 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,807,262 - 109,810,176 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,855,669 - 110,858,583 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,857,161 - 110,857,760 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,531,263 - 110,534,175 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,165,890 - 110,168,810 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,035,068 - 111,037,994 (-)NCBIUU_Cfam_GSD_1.0
Bloc1s3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,354,791 - 17,357,023 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,684,824 - 1,706,544 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,702,154 - 1,704,366 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BLOC1S3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,590,497 - 51,591,222 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,590,497 - 51,591,222 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BLOC1S3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,623,639 - 38,642,217 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,639,659 - 38,640,261 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607318,225,491 - 18,258,815 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003954   ⟹   ENSCLAP00000003878
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555552,184,490 - 2,185,138 (+)Ensembl
RefSeq Acc Id: XM_013508764   ⟹   XP_013364218
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555552,183,752 - 2,186,154 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364218 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003878.1
Reference Protein Sequences
RefSeq Acc Id: XP_013364218   ⟸   XM_013508764
- Sequence:
RefSeq Acc Id: ENSCLAP00000003878   ⟸   ENSCLAT00000003954


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002758 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003954.1 UniProtKB/TrEMBL
InterPro BLOC-1_complex_su-3 UniProtKB/TrEMBL
NCBI Gene Bloc1s3 ENTREZGENE
PANTHER BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 3 UniProtKB/TrEMBL
  PTHR31974 UniProtKB/TrEMBL
Pfam BLOC1S3 UniProtKB/TrEMBL
UniProt A0A8C2UQ67_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Bloc1s3  biogenesis of lysosomal organelles complex 1 subunit 3    biogenesis of lysosomal organelles complex-1, subunit 3  Symbol and/or name change 5135510 APPROVED