Cysltr2 (cysteinyl leukotriene receptor 2) - Rat Genome Database

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Gene: Cysltr2 (cysteinyl leukotriene receptor 2) Chinchilla lanigera
Analyze
Symbol: Cysltr2
Name: cysteinyl leukotriene receptor 2
RGD ID: 9011989
Description: ENCODES a protein that exhibits cysteinyl leukotriene receptor activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); negative regulation of glial cell proliferation (ortholog); positive regulation of angiogenesis (ortholog); PARTICIPATES IN endothelin signaling pathway; ASSOCIATED WITH otitis media; aspirin-induced respiratory disease (ortholog); asthma (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CysLT2r
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,263,698 - 2,282,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,203,342 - 2,282,635 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. Partial characterization of normal and Haemophilus influenzae-infected mucosal complementary DNA libraries in chinchilla middle ear mucosa. Kerschner JE, etal., Ann Otol Rhinol Laryngol. 2010 Apr;119(4):270-8.
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cysltr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,263,698 - 2,282,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,203,342 - 2,282,635 (+)NCBIChiLan1.0ChiLan1.0
CYSLTR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,653,929 - 48,711,226 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1348,653,711 - 48,711,226 (+)EnsemblGRCh38hg38GRCh38
GRCh371349,228,065 - 49,285,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,178,952 - 48,181,499 (+)NCBINCBI36Build 36hg18NCBI36
Build 341348,178,951 - 48,181,499NCBI
Celera1330,335,737 - 30,338,284 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,074,309 - 30,076,858 (+)NCBIHuRef
CHM1_11349,248,517 - 49,251,064 (+)NCBICHM1_1
T2T-CHM13v2.01347,874,204 - 47,931,486 (+)NCBIT2T-CHM13v2.0
Cysltr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,263,043 - 73,286,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1473,263,043 - 73,286,554 (-)EnsemblGRCm39 Ensembl
GRCm381473,025,672 - 73,049,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,025,603 - 73,049,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv371473,428,935 - 73,448,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361471,764,210 - 71,784,144 (-)NCBIMGSCv36mm8
Celera1470,545,510 - 70,565,476 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1438.54NCBI
Cysltr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,599,043 - 54,638,314 (-)NCBIGRCr8
mRatBN7.21548,189,476 - 48,228,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,189,073 - 48,304,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1552,335,467 - 52,371,705 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01553,447,041 - 53,483,279 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01550,280,153 - 50,323,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01554,903,290 - 54,941,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,905,274 - 54,906,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01558,626,639 - 58,627,568 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,647,500 - 53,648,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11553,663,279 - 53,664,209 (-)NCBI
Celera1547,842,400 - 47,878,749 (-)NCBICelera
Cytogenetic Map15p11NCBI
CYSLTR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,096,264 - 50,153,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11348,747,376 - 48,804,604 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01329,796,598 - 29,853,676 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11348,497,679 - 48,556,159 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,551,757 - 48,552,797 (+)Ensemblpanpan1.1panPan2
CYSLTR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,914,960 - 2,962,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,917,514 - 2,918,551 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,942,924 - 2,990,494 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,903,750 - 2,951,364 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,906,323 - 2,907,360 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,813,420 - 2,861,018 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,859,844 - 2,924,179 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,881,301 - 2,928,917 (-)NCBIUU_Cfam_GSD_1.0
Cysltr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,401,599 - 158,442,112 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365651,917,970 - 1,919,027 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYSLTR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,987,174 - 19,011,015 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,988,665 - 19,011,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,465,520 - 19,487,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYSLTR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,578,248 - 26,624,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605717,279,511 - 17,460,410 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cysltr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247486,040,564 - 6,043,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006967   ⟹   ENSCLAP00000006855
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554312,263,698 - 2,282,635 (+)Ensembl
RefSeq Acc Id: XM_005387568   ⟹   XP_005387625
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554312,263,698 - 2,282,635 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387569   ⟹   XP_005387626
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554312,263,698 - 2,282,635 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515743   ⟹   XP_013371197
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554312,203,342 - 2,282,635 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387625 (Get FASTA)   NCBI Sequence Viewer  
  XP_005387626 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371197 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006855
  ENSCLAP00000006855.1
Reference Protein Sequences
RefSeq Acc Id: XP_005387625   ⟸   XM_005387568
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UXF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005387626   ⟸   XM_005387569
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013371197   ⟸   XM_013515743
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UXF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000006855   ⟸   ENSCLAT00000006967
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004826 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006967 ENTREZGENE
  ENSCLAT00000006967.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro CLT2_recept UniProtKB/TrEMBL
  Cyst_leuk_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene Cysltr2 ENTREZGENE
PANTHER G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS CYSLT2RECPTR UniProtKB/TrEMBL
  CYSLTRECPTR UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2UXF8 ENTREZGENE, UniProtKB/TrEMBL