Pgk2 (phosphoglycerate kinase 2) - Rat Genome Database

Name: Pgk2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Pgk2 (phosphoglycerate kinase 2) Chinchilla lanigera

Analyze

Symbol:

Pgk2

Name:

phosphoglycerate kinase 2

RGD ID:

9005419

Description:

ENCODES a protein that exhibits phosphoglycerate kinase activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); glycolytic process (ortholog); FOUND IN cilium (ortholog); sperm fibrous sheath (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955411	8,216,432 - 8,218,065 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (ISO)

glycolytic process (ISO)

Cellular Component

cilium (ISO)

sperm fibrous sheath (ISO)

Molecular Function

phosphoglycerate kinase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pgk2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955411	8,216,432 - 8,218,065 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	49,785,660 - 49,787,285 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	49,785,660 - 49,787,285 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	49,753,373 - 49,754,998 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	49,861,323 - 49,862,966 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	49,861,324 - 49,862,966	NCBI
Celera	6	51,309,449 - 51,311,138 (-)	NCBI		Celera
Cytogenetic Map	6	p12.3	NCBI
HuRef	6	49,483,695 - 49,485,384 (-)	NCBI		HuRef
CHM1_1	6	49,756,278 - 49,757,967 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	49,627,627 - 49,629,252 (-)	NCBI		T2T-CHM13v2.0

Pgk2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	40,517,909 - 40,519,500 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	40,517,906 - 40,519,531 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	40,207,018 - 40,208,609 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	40,207,015 - 40,208,640 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	40,343,963 - 40,345,554 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	39,670,497 - 39,672,026 (-)	NCBI		MGSCv36	mm8
Celera	17	43,614,083 - 43,615,674 (-)	NCBI		Celera
Cytogenetic Map	17	B2	NCBI
cM Map	17	19.44	NCBI

Pgk2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	27,976,913 - 27,978,479 (+)	NCBI		GRCr8
mRatBN7.2	9	20,480,367 - 20,481,933 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	20,480,203 - 20,571,481 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	29,010,916 - 29,012,482 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	34,114,730 - 34,116,296 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	32,425,549 - 32,427,115 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	24,095,774 - 24,097,340 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	24,095,751 - 24,097,337 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	22,956,349 - 22,957,915 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	16,705,747 - 16,707,313 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	16,703,068 - 16,704,633 (+)	NCBI
Celera	9	18,123,078 - 18,124,644 (+)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

PGK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	64,255,058 - 64,270,523 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	60,120,713 - 60,136,179 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	49,355,154 - 49,356,804 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	50,615,916 - 50,617,599 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	50,616,199 - 50,617,452 (-)	Ensembl	panpan1.1		panPan2

PGK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	17,616,653 - 17,622,073 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	17,610,662 - 17,622,324 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	17,512,676 - 17,518,089 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	18,110,850 - 18,116,264 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	18,104,848 - 18,116,522 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	17,629,958 - 17,635,375 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	17,736,007 - 17,741,431 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	17,865,686 - 17,871,100 (-)	NCBI		UU_Cfam_GSD_1.0

PGK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	43,839,241 - 43,840,892 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	43,839,239 - 43,840,892 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	50,231,411 - 50,233,064 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	7	q14-q15	NCBI

PGK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	22,619,062 - 22,621,157 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	22,619,615 - 22,620,868 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	49,758,034 - 49,759,685 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pgk2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	14,621,673 - 14,622,926 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624799	14,621,413 - 14,623,050 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005377668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01011720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01002336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005377668 ⟹ XP_005377725

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955411	8,216,432 - 8,218,065 (+)	NCBI

Sequence:

show sequence

CGATCAGGGCGTTAGAAATTTCCAACCGCCAGCCAACCAGCAGCAGTTAAGGGATCTCCAGCAC
TGAGTGAGTCCAGGCGGCAGCCTTGATATGTCAAGATGTCTCTTTCCAAAAAGCTGACTTTAGA
CAAACTCGATGTCAAGGGGAAAAGAGTCATCATGAGGGTAGACTTCAACGTCCCTATGAAAAAT
CAGCAGATTACAAACAACCAGAGAATCAAGGCTGCCATCCCAAGCATCAAGCATTGCCTGGATC
ACGGAGCCAAGAGTGTTGTTCTTATGAGTCACCTGGGCCGCCCTGACGGTGTGGCCATGCCTGA
AAAGTACTCCTTGGAGCCCGTTGCTGCTGAGCTCAAAACCTTGCTAGGCAAAAATGTTCTGTTC
CTGAAGGATTGTGTGGGTCCAGAAGTGGAGAAGGCCTGTGCTAACCCCGCCACCGGGTCCGTTA
TCCTGCTGGAGAATCTGCGCTTCCATGTGGAGGAAGAAGGGAAGGGTCAAGATCCTTCCGGAAA
GAAGCTGAAAGCTGAGCCAGATCAAATACAAGCCTTCCGGGAGTCCCTCTCCAAGCTGGGGGAC
GTGTATGTCAACGACGCCTTCGGCACCGCACACCGGGCTCACAGTTCTATGGTGGGTGTGAACC
TGCCCCAGAAGGCATCGGGATTCCTGATGAAGAAGGAGCTAGAATACTTTGCCAAAGCCTTGGA
AAACCCAGAGAGACCCTTTCTGGCTATACTCGGTGGGGCCAAAGTGGGAGACAAGATCCAACTC
ATCAACAATATGCTGGACAAGGTCAATCACATGATTATCGGTGGTGGGATGGCTTATACCTTCC
TGAAGGTACTCAACAACATGGAGATCGGTGCCTCCCTGTTTTGTGAGGAGGGGGCCAAGACTGT
CAAAGATATCATGGACAAAGCGAGTAAGAATGGAGTCAAGATAACCTTTCCTGTGGACTTTGTC
ACTGGTGACAAGTTTGATGAGAATGCTACCGTTGGGAAAGCCACTGTAGAATCTGGCATCCCCG
CTGGCTGGATGGGTTTGGACTGCGGTCCTGAAAGCAATAAAAAGTTTGCTCAGGTTGTAGCCCA
AGCAAAGCTGATCGTTTGGAATGGCCCCGTGGGCGTGTTTGAATGGGACGCCTTTGCTCAGGGC
ACCAAAGCCCTCATGGATGAGGTGGTGAAAGCCACTTCCAGAGGCTGTGTCACCATCATAGGGG
GTGGAGACACGGCTACTTGCTGTGCCAAATGGAACACCGAAGACAAAGTCAGCCACGTGAGCAC
TGGCGGGGGTGCCAGTCTAGAGCTCCTAGAAGGCAAAGTCCTCCCTGGAGTGGAGGCGCTCAGC
AACTTGTAGTCACTGACATGTTCCTTCCTGCTCTTCCTGTCCACAGTCTCCAAGTCAGCTTAGT
ACTTTTATTTCTCAACTTGGTTTTGGTTAGAACTTACCCCCATTGAGACCCATGTGAGGATAAA
ATTACTGGAACCTCAGGAACTCTTTAACATCAGTACAACTCCGTTATTTCAGCACTGTCAAGCT
TTTGCCCGCTGGTGTCAAGATAATGTTTGGACTTCACCATTGCGCTTCCTAGGGAGAAAACCTT
AAATTGCCTATTAAATAAAGTGAGCTGAATAATT

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Protein Sequences


Protein RefSeqs	XP_005377725	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005377725 ⟸ XM_005377668

- Sequence:

show sequence

MSLSKKLTLDKLDVKGKRVIMRVDFNVPMKNQQITNNQRIKAAIPSIKHCLDHGAKSVVLMSHL
GRPDGVAMPEKYSLEPVAAELKTLLGKNVLFLKDCVGPEVEKACANPATGSVILLENLRFHVEE
EGKGQDPSGKKLKAEPDQIQAFRESLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKK
ELEYFAKALENPERPFLAILGGAKVGDKIQLINNMLDKVNHMIIGGGMAYTFLKVLNNMEIGAS
LFCEEGAKTVKDIMDKASKNGVKITFPVDFVTGDKFDENATVGKATVESGIPAGWMGLDCGPES
NKKFAQVVAQAKLIVWNGPVGVFEWDAFAQGTKALMDEVVKATSRGCVTIIGGGDTATCCAKWN
TEDKVSHVSTGGGASLELLEGKVLPGVEALSNL

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Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000017715	ENTREZGENE
Ensembl Transcript	ENSCLAT00000025889	ENTREZGENE
NCBI Gene	Pgk2	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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