Gnat3 (G protein subunit alpha transducin 3) - Rat Genome Database

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Gene: Gnat3 (G protein subunit alpha transducin 3) Chinchilla lanigera
Analyze
Symbol: Gnat3
Name: G protein subunit alpha transducin 3
RGD ID: 9001443
Description: ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); response to nicotine (ortholog); sensory perception of bitter taste (ortholog); ASSOCIATED WITH epilepsy (ortholog); Experimental Diabetes Mellitus (ortholog); male infertility (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); axoneme (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: guanine nucleotide binding protein, alpha transducing 3; guanine nucleotide-binding protein G(t) subunit alpha-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554105,163,784 - 5,211,594 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554105,145,768 - 5,211,594 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gnat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554105,163,784 - 5,211,594 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554105,145,768 - 5,211,594 (+)NCBIChiLan1.0ChiLan1.0
GNAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38780,458,635 - 80,512,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl780,458,635 - 80,512,064 (-)EnsemblGRCh38hg38GRCh38
GRCh37780,087,951 - 80,141,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36779,925,923 - 79,979,178 (-)NCBINCBI36Build 36hg18NCBI36
Celera774,788,606 - 74,841,838 (-)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef774,690,209 - 74,744,245 (-)NCBIHuRef
CHM1_1780,018,521 - 80,071,777 (-)NCBICHM1_1
T2T-CHM13v2.0781,709,929 - 81,763,341 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2779,419,422 - 79,472,664 (-)NCBI
Gnat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39518,167,568 - 18,224,666 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl518,167,547 - 18,224,832 (+)EnsemblGRCm39 Ensembl
GRCm38517,962,570 - 18,019,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl517,962,549 - 18,019,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv37517,468,388 - 17,525,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36517,474,394 - 17,531,492 (+)NCBIMGSCv36mm8
Celera514,928,625 - 14,985,540 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map58.14NCBI
Gnat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8418,054,551 - 18,104,332 (-)NCBIGRCr8
mRatBN7.2417,162,500 - 17,212,283 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl417,162,490 - 17,212,283 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx422,283,192 - 22,333,147 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0418,095,766 - 18,145,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0416,481,135 - 16,531,084 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0413,827,764 - 13,878,126 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl413,827,756 - 13,878,126 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0413,811,226 - 13,861,527 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4412,785,190 - 12,834,880 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1412,785,189 - 12,834,880 (-)NCBI
Celera412,689,882 - 12,739,628 (-)NCBICelera
Cytogenetic Map4q11NCBI
GNAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2698,310,174 - 98,363,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17146,572,691 - 146,628,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0772,422,660 - 72,476,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1786,085,196 - 86,139,227 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl786,085,465 - 86,139,227 (-)Ensemblpanpan1.1panPan2
GNAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11820,174,210 - 20,230,228 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1820,174,271 - 20,230,271 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1819,845,078 - 19,899,615 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01820,621,288 - 20,675,853 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1820,619,251 - 20,675,853 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11820,247,841 - 20,302,308 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01819,800,135 - 19,854,733 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01820,455,867 - 20,510,432 (-)NCBIUU_Cfam_GSD_1.0
Gnat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511862,070,857 - 62,110,272 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936810639,500 - 679,588 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936810639,500 - 679,678 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl999,859,691 - 99,911,158 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1999,848,406 - 99,910,236 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29110,269,976 - 110,329,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12168,372,715 - 68,431,972 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2168,374,992 - 68,431,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604235,515,106 - 35,571,977 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473929,254,996 - 29,299,315 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473929,252,919 - 29,299,315 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000023942   ⟹   ENSCLAP00000023716
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554105,163,784 - 5,211,594 (+)Ensembl
RefSeq Acc Id: XM_005377202   ⟹   XP_005377259
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554105,163,784 - 5,211,594 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510593   ⟹   XP_013366047
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554105,145,768 - 5,211,594 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377259 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366047 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023716
  ENSCLAP00000023716.1
RefSeq Acc Id: XP_005377259   ⟸   XM_005377202
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W1A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366047   ⟸   XM_013510593
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000023716   ⟸   ENSCLAT00000023942


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023942 ENTREZGENE
  ENSCLAT00000023942.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.400.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Gprotein_alpha_I UniProtKB/TrEMBL
  Gprotein_alpha_su UniProtKB/TrEMBL
  GproteinA_insert UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Gnat3 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-3 UniProtKB/TrEMBL
  PTHR10218 UniProtKB/TrEMBL
Pfam G-alpha UniProtKB/TrEMBL
PRINTS GPROTEINA UniProtKB/TrEMBL
  GPROTEINAI UniProtKB/TrEMBL
PROSITE G_ALPHA UniProtKB/TrEMBL
SMART G_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF47895 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2W1A1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gnat3  G protein subunit alpha transducin 3    guanine nucleotide binding protein, alpha transducing 3  Symbol and/or name change 5135510 APPROVED