Mlh3 (mutL homolog 3) - Rat Genome Database

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Gene: Mlh3 (mutL homolog 3) Chinchilla lanigera
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Symbol: Mlh3
Name: mutL homolog 3
RGD ID: 8976170
Description: ENCODES a protein that exhibits centromeric DNA binding (ortholog); chromatin binding (ortholog); INVOLVED IN DNA damage response (ortholog); female meiosis I (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN mismatch repair pathway; ASSOCIATED WITH breast cancer (ortholog); breast carcinoma (ortholog); colon carcinoma (ortholog); FOUND IN chiasma (ortholog); condensed chromosome (ortholog); condensed nuclear chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA mismatch repair protein Mlh3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523518,565 - 546,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523515,409 - 547,257 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mlh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523518,565 - 546,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523515,409 - 547,257 (+)NCBIChiLan1.0ChiLan1.0
MLH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381475,013,775 - 75,051,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1475,013,769 - 75,051,532 (-)EnsemblGRCh38hg38GRCh38
GRCh371475,480,478 - 75,518,170 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,550,220 - 74,587,988 (-)NCBINCBI36Build 36hg18NCBI36
Build 341474,553,052 - 74,587,886NCBI
Celera1455,518,160 - 55,555,906 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,648,309 - 55,686,423 (-)NCBIHuRef
CHM1_11475,419,018 - 75,456,769 (-)NCBICHM1_1
T2T-CHM13v2.01469,222,838 - 69,260,934 (-)NCBIT2T-CHM13v2.0
Mlh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,281,240 - 85,317,421 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1285,281,294 - 85,317,373 (-)EnsemblGRCm39 Ensembl
GRCm381285,234,466 - 85,270,647 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,234,520 - 85,270,599 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,575,470 - 86,611,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361286,123,567 - 86,159,702 (-)NCBIMGSCv36mm8
Celera1286,692,170 - 86,728,214 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.61NCBI
Mlh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,612,535 - 110,649,408 (-)NCBIGRCr8
mRatBN7.26104,881,483 - 104,917,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,881,483 - 104,917,728 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6105,051,106 - 105,087,218 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06105,349,977 - 105,386,089 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,719,639 - 104,755,751 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06109,059,386 - 109,095,876 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,059,341 - 109,095,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,461,410 - 116,497,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,280,910 - 109,318,893 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16109,285,219 - 109,322,303 (-)NCBI
Celera6102,704,430 - 102,740,558 (-)NCBICelera
Cytogenetic Map6q31NCBI
MLH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21576,099,113 - 76,133,996 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11475,315,617 - 75,351,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01455,568,033 - 55,603,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11474,413,023 - 74,447,543 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1474,413,319 - 74,445,749 (-)Ensemblpanpan1.1panPan2
MLH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,123,263 - 48,153,989 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,124,105 - 48,154,102 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,806,221 - 47,838,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0848,349,721 - 48,381,613 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl848,351,734 - 48,381,134 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1848,020,522 - 48,052,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0848,042,010 - 48,073,886 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0848,440,485 - 48,472,367 (-)NCBIUU_Cfam_GSD_1.0
Mlh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,873,503 - 27,906,386 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364884,164,918 - 4,195,517 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364884,164,322 - 4,195,408 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MLH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12452,231,468 - 52,266,179 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605340,458,381 - 40,497,060 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mlh3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473426,642,946 - 26,674,315 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473426,642,800 - 26,677,187 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004559   ⟹   ENSCLAP00000004474
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955523518,565 - 546,410 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004560   ⟹   ENSCLAP00000004475
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955523518,565 - 546,410 (+)Ensembl
RefSeq Acc Id: XM_005409373   ⟹   XP_005409430
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955523515,409 - 547,257 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409374   ⟹   XP_005409431
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955523517,374 - 547,257 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409376   ⟹   XP_005409433
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955523515,410 - 547,257 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507148   ⟹   XP_013362602
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955523521,832 - 547,257 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005409430   ⟸   XM_005409373
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YK29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005409433   ⟸   XM_005409376
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YK36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005409431   ⟸   XM_005409374
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YK29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362602   ⟸   XM_013507148
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000004474   ⟸   ENSCLAT00000004559
RefSeq Acc Id: ENSCLAP00000004475   ⟸   ENSCLAT00000004560

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004559 ENTREZGENE
  ENSCLAT00000004559.1 UniProtKB/TrEMBL
  ENSCLAT00000004560 ENTREZGENE
  ENSCLAT00000004560.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.100 UniProtKB/TrEMBL
  3.30.1540.20 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
InterPro DNA_mismatch_repair_CS UniProtKB/TrEMBL
  DNA_mismatch_S5_2-like UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/TrEMBL
  MutL/Mlh/PMS UniProtKB/TrEMBL
  MutL/Mlh/Pms UniProtKB/TrEMBL
  MutL_C UniProtKB/TrEMBL
  MutL_C_dimsub UniProtKB/TrEMBL
  MutL_C_regsub UniProtKB/TrEMBL
  MutL_C_sf UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
NCBI Gene Mlh3 ENTREZGENE
PANTHER PTHR10073 UniProtKB/TrEMBL
  PTHR10073:SF47 UniProtKB/TrEMBL
Pfam HATPase_c_3 UniProtKB/TrEMBL
  MutL_C UniProtKB/TrEMBL
PROSITE DNA_MISMATCH_REPAIR_1 UniProtKB/TrEMBL
SMART DNA_mis_repair UniProtKB/TrEMBL
  MutL_C UniProtKB/TrEMBL
Superfamily-SCOP SSF118116 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF55874 UniProtKB/TrEMBL
UniProt A0A8C2YK29 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YK36 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Mlh3  mutL homolog 3    mutL homolog 3 (E. coli)  Symbol and/or name change 5135510 APPROVED