Phactr3 (phosphatase and actin regulator 3) - Rat Genome Database

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Gene: Phactr3 (phosphatase and actin regulator 3) Chinchilla lanigera
Analyze
Symbol: Phactr3
Name: phosphatase and actin regulator 3
RGD ID: 8952658
Description: ENCODES a protein that exhibits actin binding (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555283,894,871 - 4,100,023 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555283,894,294 - 4,041,621 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phactr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555283,894,871 - 4,100,023 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555283,894,294 - 4,041,621 (-)NCBIChiLan1.0ChiLan1.0
PHACTR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,577,509 - 59,847,711 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,577,509 - 59,847,711 (+)EnsemblGRCh38hg38GRCh38
GRCh372058,152,564 - 58,422,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,612,998 - 57,856,161 (+)NCBINCBI36Build 36hg18NCBI36
Celera2054,920,349 - 55,163,467 (+)NCBICelera
Cytogenetic Map20q13.32-q13.33NCBI
HuRef2054,940,095 - 55,209,507 (+)NCBIHuRef
CHM1_12058,053,615 - 58,323,828 (+)NCBICHM1_1
T2T-CHM13v2.02061,361,726 - 61,631,999 (+)NCBIT2T-CHM13v2.0
Phactr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392177,760,768 - 177,980,285 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2177,760,768 - 177,980,285 (+)EnsemblGRCm39 Ensembl
GRCm382178,118,975 - 178,338,492 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2178,118,975 - 178,338,492 (+)EnsemblGRCm38mm10GRCm38
MGSCv372177,853,680 - 178,073,197 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362178,071,425 - 178,265,899 (+)NCBIMGSCv36mm8
Celera2182,204,673 - 182,424,892 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.67NCBI
Phactr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83185,582,134 - 185,801,404 (+)NCBIGRCr8
mRatBN7.23165,205,247 - 165,423,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3165,205,255 - 165,423,153 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3169,716,972 - 169,797,313 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03178,676,063 - 178,756,399 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03175,342,833 - 175,422,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03173,798,542 - 173,871,386 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3173,798,545 - 173,871,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03183,219,715 - 183,304,793 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43167,365,400 - 167,424,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13167,271,435 - 167,330,414 (+)NCBI
Celera3167,138,272 - 167,217,147 (-)NCBICelera
Cytogenetic Map3q43NCBI
PHACTR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,344,405 - 65,616,260 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12065,337,529 - 65,609,382 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,931,844 - 56,203,649 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12057,384,811 - 57,555,565 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2057,287,802 - 57,555,565 (+)Ensemblpanpan1.1panPan2
PHACTR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12444,249,220 - 44,460,447 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2444,228,057 - 44,460,445 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,495,062 - 43,704,651 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02445,117,681 - 45,326,956 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2445,096,301 - 45,328,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12444,218,841 - 44,427,763 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02444,337,561 - 44,546,653 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,997,855 - 45,208,262 (+)NCBIUU_Cfam_GSD_1.0
Phactr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,632,558 - 192,803,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365148,086,607 - 8,256,405 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365148,086,218 - 8,256,967 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHACTR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1759,625,982 - 59,862,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11759,647,575 - 59,864,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21767,046,709 - 67,283,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHACTR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.124,295,246 - 4,568,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl24,294,296 - 4,540,911 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605052,337,595 - 52,613,543 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phactr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,900,666 - 26,116,076 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,900,666 - 26,115,192 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003793   ⟹   ENSCLAP00000003717
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555283,894,871 - 4,100,023 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003794   ⟹   ENSCLAP00000003718
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555283,896,767 - 3,985,466 (-)Ensembl
RefSeq Acc Id: XM_005410046   ⟹   XP_005410103
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555283,894,294 - 4,041,621 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410103 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003717
  ENSCLAP00000003717.1
  ENSCLAP00000003718.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410103   ⟸   XM_005410046
- UniProtKB: A0A8C2YJQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003717   ⟸   ENSCLAT00000003793
RefSeq Acc Id: ENSCLAP00000003718   ⟸   ENSCLAT00000003794


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002652 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003793 ENTREZGENE
  ENSCLAT00000003793.1 UniProtKB/TrEMBL
  ENSCLAT00000003794.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1750 UniProtKB/TrEMBL
  6.10.140.2130 UniProtKB/TrEMBL
InterPro RPEL_repeat UniProtKB/TrEMBL
NCBI Gene Phactr3 ENTREZGENE
PANTHER PHOSPHATASE AND ACTIN REGULATOR PHACTR UniProtKB/TrEMBL
  PTHR12751:SF7 UniProtKB/TrEMBL
Pfam RPEL UniProtKB/TrEMBL
PROSITE RPEL UniProtKB/TrEMBL
SMART RPEL UniProtKB/TrEMBL
UniProt A0A8C2UQM4_CHILA UniProtKB/TrEMBL
  A0A8C2YJQ3 ENTREZGENE, UniProtKB/TrEMBL