Bhlhe22 (basic helix-loop-helix family member e22) - Rat Genome Database

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Gene: Bhlhe22 (basic helix-loop-helix family member e22) Chinchilla lanigera
Analyze
Symbol: Bhlhe22
Name: basic helix-loop-helix family member e22
RGD ID: 8950825
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); anterior commissure morphogenesis (ortholog); central nervous system projection neuron axonogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basic helix-loop-helix family, member e22; class E basic helix-loop-helix protein 22
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544414,458,307 - 14,460,441 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Bhlhe22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544414,458,307 - 14,460,441 (-)NCBIChiLan1.0ChiLan1.0
BHLHE22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38864,580,365 - 64,583,627 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl864,580,365 - 64,583,627 (+)EnsemblGRCh38hg38GRCh38
GRCh37865,492,922 - 65,496,184 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36865,655,368 - 65,658,740 (+)NCBINCBI36Build 36hg18NCBI36
Build 34865,655,367 - 65,658,739NCBI
Celera861,482,821 - 61,486,193 (+)NCBICelera
Cytogenetic Map8q12.3NCBI
HuRef860,983,033 - 60,986,429 (+)NCBIHuRef
CHM1_1865,546,484 - 65,549,880 (+)NCBICHM1_1
T2T-CHM13v2.0865,005,787 - 65,009,049 (+)NCBIT2T-CHM13v2.0
Bhlhe22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39318,108,489 - 18,111,678 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl318,108,338 - 18,111,681 (+)EnsemblGRCm39 Ensembl
GRCm38318,054,325 - 18,057,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl318,054,174 - 18,057,517 (+)EnsemblGRCm38mm10GRCm38
MGSCv37317,954,325 - 17,957,514 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36318,246,553 - 18,249,657 (+)NCBIMGSCv36mm8
Celera318,050,108 - 18,053,297 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map34.98NCBI
Bhlhe22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82102,402,622 - 102,405,732 (+)NCBIGRCr8
mRatBN7.22100,486,400 - 100,489,510 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2100,486,400 - 100,489,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2107,001,053 - 107,004,167 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02105,122,157 - 105,125,271 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02100,115,930 - 100,119,038 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02102,685,513 - 102,688,624 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2102,685,513 - 102,688,624 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02122,425,612 - 122,428,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42103,086,407 - 103,089,400 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12103,031,370 - 103,034,367 (+)NCBI
Celera295,892,507 - 95,895,619 (+)NCBICelera
Cytogenetic Map2q24NCBI
BHLHE22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2780,312,550 - 80,316,583 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1855,952,394 - 55,955,669 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0861,119,561 - 61,122,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1862,791,428 - 62,793,614 (+)NCBIpanpan1.1PanPan1.1panPan2
BHLHE22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2914,752,451 - 14,755,292 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02914,529,337 - 14,532,177 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2914,529,361 - 14,530,479 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12914,541,913 - 14,544,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02914,654,476 - 14,657,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02914,921,835 - 14,924,672 (+)NCBIUU_Cfam_GSD_1.0
Bhlhe22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530365,697,850 - 65,700,286 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364969,085,894 - 9,087,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BHLHE22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl469,802,200 - 69,803,309 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1469,801,619 - 69,803,375 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2475,987,017 - 75,988,825 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BHLHE22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1860,476,555 - 60,483,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl860,480,825 - 60,481,976 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603981,076,562 - 81,079,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bhlhe22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474427,008,471 - 27,009,583 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474427,008,292 - 27,009,602 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013518126   ⟹   XP_013373580
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544414,458,307 - 14,460,441 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373580 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013373580   ⟸   XM_013518126
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Bhlhe22 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Bhlhe22  basic helix-loop-helix family member e22    basic helix-loop-helix family, member e22  Symbol and/or name change 5135510 APPROVED