Vcan (versican) - Rat Genome Database

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Gene: Vcan (versican) Chinchilla lanigera
Analyze
Symbol: Vcan
Name: versican
RGD ID: 8930472
Description: ENCODES a protein that exhibits protein phosphatase binding (ortholog); INVOLVED IN axon regeneration (ortholog); glial cell migration (ortholog); heart development (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); basal cell carcinoma (ortholog); endometriosis (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541826,967,595 - 27,078,430 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Vcan
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541826,967,595 - 27,078,430 (-)NCBIChiLan1.0ChiLan1.0
VCAN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38583,471,744 - 83,582,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl583,471,618 - 83,582,303 (+)EnsemblGRCh38hg38GRCh38
GRCh37582,767,563 - 82,878,121 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36582,803,339 - 82,912,737 (+)NCBINCBI36Build 36hg18NCBI36
Build 34582,803,338 - 82,912,737NCBI
Celera578,672,557 - 78,783,162 (+)NCBICelera
Cytogenetic Map5q14.2-q14.3NCBI
HuRef577,975,785 - 78,086,373 (+)NCBIHuRef
CHM1_1582,200,193 - 82,311,247 (+)NCBICHM1_1
T2T-CHM13v2.0583,960,520 - 84,071,053 (+)NCBIT2T-CHM13v2.0
Vcan
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391389,803,429 - 89,891,146 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1389,803,431 - 89,890,628 (-)EnsemblGRCm39 Ensembl
GRCm381389,655,309 - 89,743,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1389,655,312 - 89,742,509 (-)EnsemblGRCm38mm10GRCm38
MGSCv371389,794,915 - 89,882,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361390,129,514 - 90,216,773 (-)NCBIMGSCv36mm8
Celera1393,253,094 - 93,340,280 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.5NCBI
Vcan
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8222,497,035 - 22,595,955 (-)NCBIGRCr8
mRatBN7.2220,761,718 - 20,860,637 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl220,761,718 - 20,860,637 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx227,798,986 - 27,898,522 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0225,899,274 - 25,998,816 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0220,683,909 - 20,782,542 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0218,490,102 - 18,587,340 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl218,490,102 - 18,565,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0218,363,890 - 18,463,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4219,712,629 - 19,801,443 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1219,634,740 - 19,688,742 (-)NCBI
Celera216,903,548 - 17,002,158 (-)NCBICelera
Cytogenetic Map2q12NCBI
VCAN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2431,721,703 - 31,832,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1529,875,328 - 29,986,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0531,699,278 - 31,810,169 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1532,019,709 - 32,130,350 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl532,019,709 - 32,130,351 (-)Ensemblpanpan1.1panPan2
VCAN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1324,127,293 - 24,238,859 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl324,119,181 - 24,239,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha325,365,073 - 25,476,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0324,026,612 - 24,144,361 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl324,026,612 - 24,144,477 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1323,995,927 - 24,107,068 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,956,080 - 24,067,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0324,243,468 - 24,354,843 (-)NCBIUU_Cfam_GSD_1.0
Vcan
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213179,937,730 - 180,040,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364692,585,134 - 2,688,029 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364692,585,142 - 2,688,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VCAN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl291,384,391 - 91,811,208 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1291,682,177 - 91,811,674 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2293,783,322 - 93,895,492 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VCAN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1477,581,627 - 77,692,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl477,593,449 - 77,690,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604926,489,259 - 26,600,350 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vcan
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247433,635,086 - 3,743,332 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013513017   ⟹   XP_013368471
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541826,967,595 - 27,078,430 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368471 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006483.1
Reference Protein Sequences
RefSeq Acc Id: XP_013368471   ⟸   XM_013513017
- Sequence:
Protein Domains
C-type lectin   EGF-like   Link   Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004575 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006590.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Link_dom UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene Vcan ENTREZGENE
PANTHER AGGRECAN/VERSICAN PROTEOGLYCAN UniProtKB/TrEMBL
  VERSICAN CORE PROTEIN UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
  Xlink UniProtKB/TrEMBL
PRINTS EGFBLOOD UniProtKB/TrEMBL
  LINKMODULE UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CLECT UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LINK UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A8C2UZC8_CHILA UniProtKB/TrEMBL