Gene: LOC102015813 (chromosome unknown open reading frame, human C7orf50) Chinchilla lanigera
Analyze
Symbol:
LOC102015813 (Ensembl: C7orf50)
Name:
chromosome unknown open reading frame, human C7orf50
RGD ID:
8915544
Description:
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
uncharacterized protein C7orf50 homolog
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955460 8,712,187 - 8,839,187 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955460 8,714,109 - 8,839,162 (-) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
Comparative Map Data
LOC102015813 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955460 8,712,187 - 8,839,187 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955460 8,714,109 - 8,839,162 (-) NCBI ChiLan1.0 ChiLan1.0
C7orf50 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 7 977,964 - 1,138,257 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 7 996,986 - 1,138,260 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 7 1,017,600 - 1,177,893 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 7 1,003,168 - 1,144,360 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 7 1,004,263 - 1,143,944 (-) NCBI Celera Cytogenetic Map 7 p22.3 NCBI HuRef 7 953,334 - 1,091,254 (-) NCBI HuRef CHM1_1 7 1,035,534 - 1,175,875 (-) NCBI CHM1_1 T2T-CHM13v2.0 7 1,082,961 - 1,240,814 (-) NCBI T2T-CHM13v2.0 CRA_TCAGchr7v2 7 1,091,227 - 1,231,128 (-) NCBI
3110082I17Rik Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 139,345,494 - 139,446,291 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 139,345,494 - 139,446,282 (-) Ensembl GRCm39 Ensembl GRCm38 5 139,359,739 - 139,460,534 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 139,359,739 - 139,460,527 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 139,835,693 - 139,936,488 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 139,613,382 - 139,714,155 (-) NCBI MGSCv36 mm8 Celera 5 136,413,785 - 136,514,787 (-) NCBI Celera Cytogenetic Map 5 G2 NCBI cM Map 5 78.45 NCBI
C12h7orf50 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 20,298,968 - 20,402,890 (+) NCBI GRCr8 mRatBN7.2 12 15,185,728 - 15,289,042 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 15,185,707 - 15,289,069 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 12 15,995,844 - 16,099,055 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 12 16,619,589 - 16,722,793 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 12 15,645,952 - 15,749,008 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 17,277,635 - 17,380,497 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 17,277,635 - 17,380,494 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 12 19,264,599 - 19,367,360 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 12 15,686,414 - 15,789,818 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 12 16,939,573 - 17,043,009 (+) NCBI Celera Cytogenetic Map 12 q11 NCBI
C6H7orf50 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 6 5,944,233 - 6,086,474 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 7 54,268,922 - 54,411,261 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 7 1,156,770 - 1,383,223 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 7 1,368,898 - 1,505,516 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 7 1,369,532 - 1,497,518 (-) Ensembl panpan1.1 panPan2
C6H7orf50 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 6 15,749,123 - 15,896,429 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 6 17,222,258 - 17,369,562 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 6 15,880,112 - 16,027,178 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 6 15,879,280 - 16,036,123 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 6 15,682,358 - 15,830,028 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 6 15,609,505 - 15,756,571 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 6 15,896,874 - 16,044,771 (+) NCBI UU_Cfam_GSD_1.0
CUNH7orf50 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409344 143,677,790 - 143,796,404 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936754 1,214,480 - 1,324,497 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936754 1,213,948 - 1,332,534 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
C3H7orf50
CUNH7orf50 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 28 20,452,734 - 20,575,087 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 28 20,452,748 - 20,575,450 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666090 1,117,989 - 1,245,579 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
CUNH7orf50
Expression
Sequence
RefSeq Acc Id:
ENSCLAT00000007428 ⟹ ENSCLAP00000007312
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955460 8,712,187 - 8,839,187 (-) Ensembl
RefSeq Acc Id:
XM_005397799 ⟹ XP_005397856
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955460 8,714,109 - 8,838,977 (-) NCBI
Sequence:
GCGTGGCGGTGGCTGTGGCCGCTCCACGTGGGTGCGCAGAGCTCTTCCTATGGTGCGCCCGCGG
hide sequence
RefSeq Acc Id:
XM_013521224 ⟹ XP_013376678
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955460 8,714,109 - 8,839,159 (-) NCBI
Sequence:
CCGCTTGCCCGAAGGCGGGACTGGCGCGTACCTGAAGCAGGGGGCCTGCCGGAAGCCCGCCTAG
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RefSeq Acc Id:
XM_013521225 ⟹ XP_013376679
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955460 8,716,070 - 8,839,162 (-) NCBI
Sequence:
GCGCCGCTTGCCCGAAGGCGGGACTGGCGCGTACCTGAAGCAGGGGGCCTGCCGGAAGCCCGCC
hide sequence
RefSeq Acc Id:
XP_005397856 ⟸ XM_005397799
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2V1D2 (UniProtKB/TrEMBL)
- Sequence:
MVKQKRKGPEVTKKNRKKLKVSVEETLRAADATADEEEASLEGVAASRVQDTVPQLSSEERRVL
hide sequence
RefSeq Acc Id:
XP_013376678 ⟸ XM_013521224
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C2V1D2 (UniProtKB/TrEMBL)
- Sequence:
MVKQKRKGPEVTKKNRKKLKVSVEETLRAADATADEEEASLEGVAASRVQDTVPQLSSEERRVL
hide sequence
RefSeq Acc Id:
XP_013376679 ⟸ XM_013521225
- Peptide Label:
isoform X2
- Sequence:
MVKQKRKGPEVTKKNRKKLKVSVEETLRAADATADEEEASLEGVAASRVQDTVPQLSSEERRVL
hide sequence
RefSeq Acc Id:
ENSCLAP00000007312 ⟸ ENSCLAT00000007428
Additional Information
