Pigw (phosphatidylinositol glycan anchor biosynthesis class W) - Rat Genome Database

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Gene: Pigw (phosphatidylinositol glycan anchor biosynthesis class W) Chinchilla lanigera
Analyze
Symbol: Pigw
Name: phosphatidylinositol glycan anchor biosynthesis class W
RGD ID: 8911810
Description: INVOLVED IN protein localization to plasma membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositol glycan anchor biosynthesis, class W
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554511,388,474 - 1,391,559 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554511,388,474 - 1,391,671 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pigw
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554511,388,474 - 1,391,559 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554511,388,474 - 1,391,671 (-)NCBIChiLan1.0ChiLan1.0
PIGW
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381736,534,987 - 36,539,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1736,534,987 - 36,539,310 (+)EnsemblGRCh38hg38GRCh38
GRCh371734,890,814 - 34,895,152 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,965,516 - 31,969,263 (+)NCBINCBI36Build 36hg18NCBI36
Build 341731,965,515 - 31,969,263NCBI
Celera1731,713,466 - 31,717,424 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,828,170 - 30,831,918 (+)NCBIHuRef
CHM1_11734,927,118 - 34,930,864 (+)NCBICHM1_1
T2T-CHM13v2.01737,520,740 - 37,525,056 (+)NCBIT2T-CHM13v2.0
Pigw
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,767,139 - 84,771,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,767,141 - 84,771,111 (-)EnsemblGRCm39 Ensembl
GRCm381184,876,313 - 84,880,285 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,876,315 - 84,880,285 (-)EnsemblGRCm38mm10GRCm38
MGSCv371184,689,815 - 84,693,787 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,692,508 - 84,696,390 (-)NCBIMGSCv36mm8
Celera1194,496,333 - 94,532,662 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.34NCBI
Pigw
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81070,246,904 - 70,248,412 (-)NCBIGRCr8
mRatBN7.21069,746,996 - 69,782,656 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1069,748,789 - 69,790,475 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1074,369,482 - 74,370,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,874,249 - 73,875,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01069,338,916 - 69,340,424 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01072,194,774 - 72,198,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1072,194,929 - 72,196,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01072,101,633 - 72,105,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41073,152,849 - 73,154,357 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11073,167,218 - 73,168,727 (-)NCBI
Celera1068,677,469 - 68,678,977 (-)NCBICelera
Cytogenetic Map10q26NCBI
PIGW
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,221,856 - 28,226,353 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,103,675 - 30,107,981 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,542,694 - 20,547,347 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11720,837,103 - 20,841,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1720,837,769 - 20,839,283 (-)Ensemblpanpan1.1panPan2
PIGW
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1936,419,807 - 36,424,596 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl936,421,216 - 36,424,218 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha935,604,282 - 35,650,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,191,002 - 37,233,529 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,230,555 - 37,233,526 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1935,969,672 - 36,016,035 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0936,256,607 - 36,303,225 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0936,344,864 - 36,391,468 (+)NCBIUU_Cfam_GSD_1.0
Pigw
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560235,396,190 - 35,399,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,675,765 - 1,677,279 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,675,592 - 1,678,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGW
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,061,927 - 38,065,713 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,059,674 - 38,065,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PIGW
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11631,267,404 - 31,279,450 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1631,267,562 - 31,269,073 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660772,007,516 - 2,010,858 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigw
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248713,616,359 - 3,619,560 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248713,616,335 - 3,619,668 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015972   ⟹   ENSCLAP00000015809
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554511,388,474 - 1,391,559 (-)Ensembl
RefSeq Acc Id: XM_005393950   ⟹   XP_005394007
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554511,388,474 - 1,391,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005393951   ⟹   XP_005394008
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554511,388,474 - 1,390,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519338   ⟹   XP_013374792
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554511,388,474 - 1,391,671 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394007 (Get FASTA)   NCBI Sequence Viewer  
  XP_005394008 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015809
  ENSCLAP00000015809.1
Reference Protein Sequences
RefSeq Acc Id: XP_005394007   ⟸   XM_005393950
- UniProtKB: A0A8C2VJU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394008   ⟸   XM_005393951
- UniProtKB: A0A8C2VJU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374792   ⟸   XM_013519338
- UniProtKB: A0A8C2VJU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015809   ⟸   ENSCLAT00000015972


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010868 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015972 ENTREZGENE
  ENSCLAT00000015972.1 UniProtKB/TrEMBL
InterPro PIGW/GWT1 UniProtKB/TrEMBL
NCBI Gene Pigw ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN UniProtKB/TrEMBL
  PTHR20661 UniProtKB/TrEMBL
Pfam GWT1 UniProtKB/TrEMBL
PIRSF GWT1 UniProtKB/TrEMBL
UniProt A0A8C2VJU2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Pigw  phosphatidylinositol glycan anchor biosynthesis class W    phosphatidylinositol glycan anchor biosynthesis, class W  Symbol and/or name change 5135510 APPROVED