Ehd1 (EH domain containing 1) - Rat Genome Database

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Gene: Ehd1 (EH domain containing 1) Chinchilla lanigera
Analyze
Symbol: Ehd1
Name: EH domain containing 1
RGD ID: 8906792
Description: ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); cholesterol homeostasis (ortholog); cilium assembly (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Disease Progression (ortholog); glycogen storage disease V (ortholog); FOUND IN ciliary pocket membrane (ortholog); early endosome (ortholog); early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EH domain-containing protein 1; EH-domain containing 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,302,655 - 20,324,591 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,302,409 - 20,324,591 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ehd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,302,655 - 20,324,591 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,302,409 - 20,324,591 (+)NCBIChiLan1.0ChiLan1.0
EHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,851,642 - 64,879,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,851,642 - 64,888,296 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,619,114 - 64,647,165 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,376,784 - 64,402,767 (-)NCBINCBI36Build 36hg18NCBI36
Build 341164,376,783 - 64,402,767NCBI
Celera1161,946,373 - 61,972,260 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,947,278 - 60,973,225 (-)NCBIHuRef
CHM1_11164,504,028 - 64,529,958 (-)NCBICHM1_1
T2T-CHM13v2.01164,844,974 - 64,872,935 (-)NCBIT2T-CHM13v2.0
Ehd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,326,926 - 6,350,126 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,326,755 - 6,350,126 (+)EnsemblGRCm39 Ensembl
GRCm38196,276,896 - 6,300,096 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,276,725 - 6,300,096 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,276,896 - 6,300,096 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,276,896 - 6,300,096 (+)NCBIMGSCv36mm8
Celera196,149,194 - 6,172,784 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.4NCBI
Ehd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,009,113 - 213,031,488 (+)NCBIGRCr8
mRatBN7.21203,579,850 - 203,602,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,579,869 - 203,602,212 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,928,608 - 211,950,969 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,025,181 - 219,047,556 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,716,238 - 211,738,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,644,867 - 221,667,242 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,644,867 - 221,667,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,632,629 - 228,655,004 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,055,234 - 209,077,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,213,709 - 209,234,786 (+)NCBI
Celera1201,113,342 - 201,135,717 (+)NCBICelera
Cytogenetic Map1q43NCBI
EHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,079,274 - 66,107,007 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,122,242 - 67,149,976 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,208,840 - 60,236,513 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,550,258 - 63,577,252 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,547,286 - 63,577,252 (-)Ensemblpanpan1.1panPan2
EHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,291,304 - 52,312,787 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,291,327 - 52,311,526 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,898,642 - 50,920,115 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,332,471 - 53,353,954 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,332,477 - 53,353,942 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,427,459 - 52,448,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,012,970 - 52,034,432 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,797,390 - 52,818,875 (+)NCBIUU_Cfam_GSD_1.0
Ehd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,007,727 - 8,029,462 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,450,188 - 4,473,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,451,207 - 4,473,078 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,298,208 - 7,321,576 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,299,295 - 7,321,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,430,635 - 6,454,134 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,356,128 - 9,382,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,356,177 - 9,382,832 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,742,061 - 106,769,019 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,522,750 - 21,544,133 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,522,871 - 21,543,925 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024145   ⟹   ENSCLAP00000023918
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542220,302,655 - 20,324,591 (+)Ensembl
RefSeq Acc Id: XM_005384552   ⟹   XP_005384609
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542220,302,409 - 20,324,591 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384609 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023918
  ENSCLAP00000023918.1
Reference Protein Sequences
RefSeq Acc Id: XP_005384609   ⟸   XM_005384552
- Sequence:
RefSeq Acc Id: ENSCLAP00000023918   ⟸   ENSCLAT00000024145
Protein Domains
Dynamin-type G   EF-hand   EH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016412 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024145 ENTREZGENE
  ENSCLAT00000024145.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.268.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro DUF5600 UniProtKB/TrEMBL
  Dynamin_N UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  EH_dom UniProtKB/TrEMBL
  EHD_N UniProtKB/TrEMBL
  G_DYNAMIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Ehd1 ENTREZGENE
PANTHER EH DOMAIN UniProtKB/TrEMBL
  EPIDERMAL GROWTH FACTOR RECEPTOR PATHWAY SUBSTRATE CLONE 15, ISOFORM A UniProtKB/TrEMBL
Pfam DUF5600 UniProtKB/TrEMBL
  Dynamin_N UniProtKB/TrEMBL
  EF-hand_4 UniProtKB/TrEMBL
  EHD_N UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  G_DYNAMIN_2 UniProtKB/TrEMBL
  PS50031 UniProtKB/TrEMBL
SMART SM00027 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2W4L3_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ehd1  EH domain containing 1    EH-domain containing 1  Symbol and/or name change 5135510 APPROVED