Dcst1 (DC-STAMP domain containing 1)

Gene: Dcst1 (DC-STAMP domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Dcst1

Name:

DC-STAMP domain containing 1

RGD ID:

8902663

Description:

ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); negative regulation of type I interferon-mediated signaling pathway (ortholog); sperm-egg recognition (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DC-STAMP domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	1,530,062 - 1,545,139 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	1,529,926 - 1,545,459 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fusion of sperm to egg plasma membrane involved in single fertilization (ISO)

negative regulation of type I interferon-mediated signaling pathway (ISO)

sperm-egg recognition (ISO)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

ubiquitin protein ligase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Dcst1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	1,530,062 - 1,545,139 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	1,529,926 - 1,545,459 (+)	NCBI	ChiLan1.0	ChiLan1.0

DCST1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	155,033,806 - 155,050,930 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	155,033,824 - 155,050,930 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	155,006,282 - 155,023,406 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	153,272,924 - 153,290,030 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	128,077,323 - 128,094,429 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	126,368,275 - 126,385,407 (+)	NCBI		HuRef
CHM1_1	1	156,402,087 - 156,419,230 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	154,173,182 - 154,190,315 (+)	NCBI		T2T-CHM13v2.0

Dcst1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	89,257,526 - 89,272,560 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	89,257,526 - 89,272,560 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	89,350,219 - 89,365,253 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	89,350,219 - 89,365,253 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	89,154,157 - 89,169,161 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	89,436,018 - 89,451,180 (-)	NCBI		MGSCv36	mm8
Celera	3	89,385,278 - 89,400,282 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.08	NCBI

Dcst1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	177,063,083 - 177,079,914 (-)	NCBI		GRCr8
mRatBN7.2	2	174,765,203 - 174,784,023 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	174,765,350 - 174,781,806 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	188,672,549 - 188,690,004 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	188,672,405 - 188,689,392 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,082,762 - 208,105,311 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	181,537,936 - 181,560,124 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	181,488,041 - 181,510,230 (-)	NCBI
Celera	2	168,706,913 - 168,724,388 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

DCST1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	94,790,000 - 94,807,221 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	94,522,036 - 94,539,274 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	130,381,851 - 130,398,975 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	133,991,485 - 134,008,614 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	133,991,485 - 134,008,614 (+)	Ensembl	panpan1.1		panPan2

DCST1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	42,443,787 - 42,457,361 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	42,428,113 - 42,457,062 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	41,933,862 - 41,947,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	42,312,690 - 42,326,476 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	42,312,821 - 42,325,942 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,092,400 - 42,106,183 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,146,233 - 42,160,016 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	42,429,578 - 42,443,361 (-)	NCBI		UU_Cfam_GSD_1.0

Dcst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	25,540,880 - 25,556,071 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	4,571,319 - 4,586,394 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	4,571,349 - 4,586,459 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DCST1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	94,748,429 - 94,768,452 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	94,748,430 - 94,768,322 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	103,530,040 - 103,536,291 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DCST1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	8,779,692 - 8,797,327 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	8,779,754 - 8,797,306 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	8,114,042 - 8,131,674 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dcst1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	2,451,404 - 2,465,397 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	2,451,247 - 2,465,459 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005411560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005411562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005411566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01071859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01089916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000009120 ⟹ ENSCLAP00000008992

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955545	1,530,062 - 1,545,139 (+)	Ensembl

RefSeq Acc Id:

XM_005411560 ⟹ XP_005411617

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955545	1,530,586 - 1,545,459 (+)	NCBI

Sequence:

show sequence

CCCAAACATCCTCCAGTTTCCCGCAGCCCCTTCCCCCCTCAAGCCCCTAACCCTAGTGAGCCTA
ACCCAGCCAGCACAGAGGGCTGTGAGCCTAACTGCTCACCTCTCAGCTGTGCAGAGACTTCTGA
GCTGGGGGCTGCCTGAGCTCTGCAGCCGGTTCCTGTGGCGCCAGCCAGGAGAGTTCCCTGTCAC
TGCCTTCCTGCTGGGGGCCGGCACTGGGGGGCTCCTGGCCATAGGTCTCTTTCAGCTCCTGGTG
AACCCCATGAACATCTATGAAGAGCAGAAGATGGTGGTGTTGTACGGCTTGGCACCACATTTTC
ACTTACAAAATGTCAAAGACCAGAAAGGAAAGGAAGGAGCCTCCCTTCATCACACCCTCTGAAG
GAACAGGGGATGTTCCCTACAATCTCAGCAGGCTTCCTCTTATATCTCTGGCCAGGGCAGCATC
AATCTACTGTTCCCTGAACCTGCTGGATTCAGGTTTGGGGGCCATAGGTTGGGGGACCTCCCCT
CACATCCGCTGTGCCAGCCTCCTGCTCGTGCCTAAGATGCTGGGCAAAGAGGGTAGGCTCTTTG
TCCTGGGATATGCCTTGGCTGCCATCTATGAAGGGCCAGTGGCCAATCTGAAGCACAATCTCAA
CGAAGTGGTAGCATCGCTGGGCTGCACCGTGGAGCTGCAGATCAACAACACCCGTGCGACCTGG
CGCATCTCCACGGCCCCACTCCGGGCAGTGTTCAAGGACCTGTTGGGCAGCAAAGAATCACTGA
AAGCAGAGACTCGGAACATCTCCACTGCCTTTAAGGACCTGGATGCCCAGGTGAGCAGTGAGGC
TGGCTACGAACCTGAGACTGCCATGGACTCCCAGGGGACAGCCCAAGGTGCAGAGGCCCGGAAG
GCCCCCAGCACTAAGCTCCACCTGTCAACCCAGAAGATGTTCGAGCTGAAGACCAAGCTGCGCT
GCTCCTACGTGGTGAACCGGGCTATTCTCAACTGTCATCAGTGGTTTGACCGAAAGCATGAACA
GTGCATGCAACGCATCTGGGTCCCACTCCTGAACCACTTGCTCTGCCTGCCAATGAAATTTAAG
TTCTTCTGTGGCATTGCCAAGGTGATGGAGGTTTGGTGCCGCAGCCGTATCCCGGTGGAGGGCA
ACTTTGGGCAGACCTATGATTCCCTCAATCAGTCTATTCATGGCCTGGATGGAGAATTTTCAGC
CAATATTGACATCAAGGAGGAGAAGCAGGCTGGGGTGCTGGGCCTCAACACGACCTGGGAGCAC
GTGAGCACCGAGGTGCGGGACTACGTGGAGCGGCAGGAGGCCCAGCTGGAGTGGGTCCTCGGGC
TGTTGCATGCACTGCTGTCCTGCACCTTCCTGCTGGTCCTCCGAGCGTCCTTCTCCTACATGGA
CAGCTATAACCAGGACATTCGCTTTGACAACATCTACATCAGCACCTACTTCTGTCAGATCGAT
GAGCGCAGGAAGAAGCTGGGTAAACGGACTCTGCTGCCACTCCGTAAGGCTGAGAAGAAGAGCC
TCATCTTCCCCTGCAAGCCCACCATCCAGGCCTCGGAAATGAGCAGCTTGGCACGGGAGCTCCT
GGAGACGCTGCCCGTCCTGCTGCTTCTGCTGGTGCTGTGTGGGCTCGACTGGGCCCTCTACTCG
GTCTTTGATACCATCCGCCAACACTCCTTCCTGCAGTACTCCTTCCAGAGCAGTCATAAACTGG
AGGTGAAGGTGGAAGGAGACTCCATGCTTGCCCGGCTTCTTCGGAAGACCATTGGGGCCCTGAA
TACTTCTTCAGACACAGGGGTGGAATCAAACAACATGCGCTTTTGGCTACCGGCTCCGGAGGGT
CATCGCAGCCTTCTACTTTCCCAAGTCCTCTCTGTCCCAGCGAGAGAAGAAGCGGGTCCTGTTC
CTCTACAACGAGCTATTGAGGAAGAGAGCAGCCTTCACGAAGCTGAGGCGGGCTGCTATCGTGA
GGCGGGCCCAGCAGCAGAGGGCTCCACGCCACCACCTGGTGGACACCCTGCACCGCCGCTGCCC
GGTGCTGCGCCGCTGGCTGCGCCGGCGCTGCGTGGTGTGCCAGGCCCCCGAGACGACCGAGTCC
CACGTGTGCCCGACGCCAGACTGCCAGGCCGTGTACTGCCGGTCGTGCTGGGACGACATGCGGC
AGCAGTGCCCGGTCTGCACGCCTCGCGAGGAGCTCTCCTCTTCCGCCTTCAGCGACAGCAACGA
CGACACCACCTACGCGGAGTGAAGGGCTGGGCCCGCTTCCCGCTCTGCTACACGCTTAATAAAG
CGCCTTGTTCGCCCCTGCCGCCTGTGCTTCGTGGGGATCGGGGGTGGGCCGGGCGCTGCCCGAG
AGCTTCCTCCGCTTGGGCGGGAAGGCAGCGAGGCTCCCAGGGAAGGGTGCGGACACCGGGCGAA
GGCAGGCAAGGCGCGACGCCCAAGCCGATCGGACCCAGCTCCCCGCAGCCTAGCTGAGGCGCAC
CGCGTGGGAGGAGCCGCGGGAAAAGACTTTAGGACCCAGGGGCGGGCCTTTCCGGGGGCGGAGC
GCGGCGGGGTGGAGCGCGGCTC

hide sequence

RefSeq Acc Id:

XM_005411562 ⟹ XP_005411619

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955545	1,529,926 - 1,545,205 (+)	NCBI

Sequence:

show sequence

ATCCCTTACCTGTTCCGAGGGTTGGAGAGGGAGAGTGGGTCTCCAGTCTTCTCCCACATCTCAG
AGCTAAGGGACTGAAAGACAGATCGGACAGGGGCTGGGAGTGAGGGAGGATGGCCCCTCCCTTC
TCTCCCAGGATGGAACTTCTAAGGAAAGCCTTGAGGAGACTTCTGGGACCACAGAGGTTTCCAC
AGAACAGACCTCAGGACGCTAAACACCGTCAGAGTGGAGCAAGAGGGCAAAGAAGGAAACCAAG
CCATACCACTGTGCAGAGACTTCTGAGCTGGGGGCTGCCTGAGCTCTGCAGCCGGTTCCTGTGG
CGCCAGCCAGGAGAGTTCCCTGTCACTGCCTTCCTGCTGGGGGCCGGCACTGGGGGGCTCCTGG
CCATAGGTCTCTTTCAGCTCCTGGTGAACCCCATGAACATCTATGAAGAGCAGAAGATGGTGGT
GTTGTACGGCTTGGTGGGTTTGGGGGCCATAGGTTGGGGGACCTCCCCTCACATCCGCTGTGCC
AGCCTCCTGCTCGTGCCTAAGATGCTGGGCAAAGAGGGTAGGCTCTTTGTCCTGGGATATGCCT
TGGCTGCCATCTATGAAGGGCCAGTGGCCAATCTGAAGCACAATCTCAACGAAGTGGTAGCATC
GCTGGGCTGCACCGTGGAGCTGCAGATCAACAACACCCGTGCGACCTGGCGCATCTCCACGGCC
CCACTCCGGGCAGTGTTCAAGGACCTGTTGGGCAGCAAAGAATCACTGAAAGCAGAGACTCGGA
ACATCTCCACTGCCTTTAAGGACCTGGATGCCCAGGTGAGCAGTGAGGCTGGCTACGAACCTGA
GACTGCCATGGACTCCCAGGGGACAGCCCAAGGTGCAGAGGCCCGGAAGGCCCCCAGCACTAAG
CTCCACCTGTCAACCCAGAAGATGTTCGAGCTGAAGACCAAGCTGCGCTGCTCCTACGTGGTGA
ACCGGGCTATTCTCAACTGTCATCAGTGGTTTGACCGAAAGCATGAACAGTGCATGCAACGCAT
CTGGGTCCCACTCCTGAACCACTTGCTCTGCCTGCCAATGAAATTTAAGTTCTTCTGTGGCATT
GCCAAGGTGATGGAGGTTTGGTGCCGCAGCCGTATCCCGGTGGAGGGCAACTTTGGGCAGACCT
ATGATTCCCTCAATCAGTCTATTCATGGCCTGGATGGAGAATTTTCAGCCAATATTGACATCAA
GGAGGAGAAGCAGGCTGGGGTGCTGGGCCTCAACACGACCTGGGAGCACGTGAGCACCGAGGTG
CGGGACTACGTGGAGCGGCAGGAGGCCCAGCTGGAGTGGGTCCTCGGGCTGTTGCATGCACTGC
TGTCCTGCACCTTCCTGCTGGTCCTCCGAGCGTCCTTCTCCTACATGGACAGCTATAACCAGGA
CATTCGCTTTGACAACATCTACATCAGCACCTACTTCTGTCAGATCGATGAGCGCAGGAAGAAG
CTGGGTAAACGGACTCTGCTGCCACTCCGTAAGGCTGAGAAGAAGAGCCTCATCTTCCCCTGCA
AGCCCACCATCCAGGCCTCGGAAATGAGCAGCTTGGCACGGGAGCTCCTGGAGACGCTGCCCGT
CCTGCTGCTTCTGCTGGTGCTGTGTGGGCTCGACTGGGCCCTCTACTCGGTCTTTGATACCATC
CGCCAACACTCCTTCCTGCAGTACTCCTTCCAGAGCAGTCATAAACTGGAGGTGAAGGTGGAAG
GAGACTCCATGCTTGCCCGGCTTCTTCGGAAGACCATTGGGGCCCTGAATACTTCTTCAGACAC
AGGGGTGGAATCAAACAACATGCCCTGCCTGCCCCAGCCCGTGGGCCTGGATGCCAGGGCCTAC
TGGAAGGTCACTTACCCCATCGGCCTGCTGCTGTGTCTCTGCCTGGCCCAGGCTTTTGGCTACC
GGCTCCGGAGGGTCATCGCAGCCTTCTACTTTCCCAAGCGAGAGAAGAAGCGGGTCCTGTTCCT
CTACAACGAGCTATTGAGGAAGAGAGCAGCCTTCACGAAGCTGAGGCGGGCTGCTATCGTGAGG
CGGGCCCAGCAGCAGAGGGCTCCACGCCACCACCTGGTGGACACCCTGCACCGCCGCTGCCCGG
TGCTGCGCCGCTGGCTGCGCCGGCGCTGCGTGGTGTGCCAGGCCCCCGAGACGACCGAGTCCCA
CGTGTGCCCGACGCCAGACTGCCAGGCCGTGTACTGCCGGTCGTGCTGGGACGACATGCGGCAG
CAGTGCCCGGTCTGCACGCCTCGCGAGGAGCTCTCCTCTTCCGCCTTCAGCGACAGCAACGACG
ACACCACCTACGCGGAGTGAAGGGCTGGGCCCGCTTCCCGCTCTGCTACACGCTTAATAAAGCG
CCTTGTTCGCCCCTGCCGCCTG

hide sequence

RefSeq Acc Id:

XM_005411566 ⟹ XP_005411623

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955545	1,530,937 - 1,545,459 (+)	NCBI

Sequence:

show sequence

CATGAACATCTATGAAGAGCAGAAGATGGTGGTGTTGTACGGCTTGGTTTGGGGGCCATAGGTT
GGGGGACCTCCCCTCACATCCGCTGTGCCAGCCTCCTGCTCGTGCCTAAGATGCTGGGCAAAGA
GGGTAGGCTCTTTGTCCTGGGATATGCCTTGGCTGCCATCTATGAAGGGCCAGTGGCCAATCTG
AAGCACAATCTCAACGAAGTGGTAGCATCGCTGGGCTGCACCGTGGAGCTGCAGATCAACAACA
CCCGTGCGACCTGGCGCATCTCCACGGCCCCACTCCGGGCAGTGTTCAAGGACCTGTTGGGCAG
CAAAGAATCACTGAAAGCAGAGACTCGGAACATCTCCACTGCCTTTAAGGACCTGGATGCCCAG
GTGAGCAGTGAGGCTGGCTACGAACCTGAGACTGCCATGGACTCCCAGGGGACAGCCCAAGGTG
CAGAGGCCCGGAAGGCCCCCAGCACTAAGCTCCACCTGTCAACCCAGAAGATGTTCGAGCTGAA
GACCAAGCTGCGCTGCTCCTACGTGGTGAACCGGGCTATTCTCAACTGTCATCAGTGGTTTGAC
CGAAAGCATGAACAGTGCATGCAACGCATCTGGGTCCCACTCCTGAACCACTTGCTCTGCCTGC
CAATGAAATTTAAGTTCTTCTGTGGCATTGCCAAGGTGATGGAGGTTTGGTGCCGCAGCCGTAT
CCCGGTGGAGGGCAACTTTGGGCAGACCTATGATTCCCTCAATCAGTCTATTCATGGCCTGGAT
GGAGAATTTTCAGCCAATATTGACATCAAGGAGGAGAAGCAGGCTGGGGTGCTGGGCCTCAACA
CGACCTGGGAGCACGTGAGCACCGAGGTGCGGGACTACGTGGAGCGGCAGGAGGCCCAGCTGGA
GTGGGTCCTCGGGCTGTTGCATGCACTGCTGTCCTGCACCTTCCTGCTGGTCCTCCGAGCGTCC
TTCTCCTACATGGACAGCTATAACCAGGACATTCGCTTTGACAACATCTACATCAGCACCTACT
TCTGTCAGATCGATGAGCGCAGGAAGAAGCTGGGTAAACGGACTCTGCTGCCACTCCGTAAGGC
TGAGAAGAAGAGCCTCATCTTCCCCTGCAAGCCCACCATCCAGGCCTCGGAAATGAGCAGCTTG
GCACGGGAGCTCCTGGAGACGCTGCCCGTCCTGCTGCTTCTGCTGGTGCTGTGTGGGCTCGACT
GGGCCCTCTACTCGGTCTTTGATACCATCCGCCAACACTCCTTCCTGCAGTACTCCTTCCAGAG
CAGTCATAAACTGGAGGTGAAGGTGGAAGGAGACTCCATGCTTGCCCGGCTTCTTCGGAAGACC
ATTGGGGCCCTGAATACTTCTTCAGACACAGGGGTGGAATCAAACAACATGCGCTTTTGGCTAC
CGGCTCCGGAGGGTCATCGCAGCCTTCTACTTTCCCAAGTCCTCTCTGTCCCAGCGAGAGAAGA
AGCGGGTCCTGTTCCTCTACAACGAGCTATTGAGGAAGAGAGCAGCCTTCACGAAGCTGAGGCG
GGCTGCTATCGTGAGGCGGGCCCAGCAGCAGAGGGCTCCACGCCACCACCTGGTGGACACCCTG
CACCGCCGCTGCCCGGTGCTGCGCCGCTGGCTGCGCCGGCGCTGCGTGGTGTGCCAGGCCCCCG
AGACGACCGAGTCCCACGTGTGCCCGACGCCAGACTGCCAGGCCGTGTACTGCCGGTCGTGCTG
GGACGACATGCGGCAGCAGTGCCCGGTCTGCACGCCTCGCGAGGAGCTCTCCTCTTCCGCCTTC
AGCGACAGCAACGACGACACCACCTACGCGGAGTGAAGGGCTGGGCCCGCTTCCCGCTCTGCTA
CACGCTTAATAAAGCGCCTTGTTCGCCCCTGCCGCCTGTGCTTCGTGGGGATCGGGGGTGGGCC
GGGCGCTGCCCGAGAGCTTCCTCCGCTTGGGCGGGAAGGCAGCGAGGCTCCCAGGGAAGGGTGC
GGACACCGGGCGAAGGCAGGCAAGGCGCGACGCCCAAGCCGATCGGACCCAGCTCCCCGCAGCC
TAGCTGAGGCGCACCGCGTGGGAGGAGCCGCGGGAAAAGACTTTAGGACCCAGGGGCGGGCCTT
TCCGGGGGCGGAGCGCGGCGGGGTGGAGCGCGGCTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005411617	(Get FASTA)	NCBI Sequence Viewer
	XP_005411619	(Get FASTA)	NCBI Sequence Viewer
	XP_005411623	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008992
	ENSCLAP00000008992.1

RefSeq Acc Id:	XP_005411619 ⟸ XM_005411562
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V2T5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPPFSPRMELLRKALRRLLGPQRFPQNRPQDAKHRQSGARGQRRKPSHTTVQRLLSWGLPELC SRFLWRQPGEFPVTAFLLGAGTGGLLAIGLFQLLVNPMNIYEEQKMVVLYGLVGLGAIGWGTSP HIRCASLLLVPKMLGKEGRLFVLGYALAAIYEGPVANLKHNLNEVVASLGCTVELQINNTRATW RISTAPLRAVFKDLLGSKESLKAETRNISTAFKDLDAQVSSEAGYEPETAMDSQGTAQGAEARK APSTKLHLSTQKMFELKTKLRCSYVVNRAILNCHQWFDRKHEQCMQRIWVPLLNHLLCLPMKFK FFCGIAKVMEVWCRSRIPVEGNFGQTYDSLNQSIHGLDGEFSANIDIKEEKQAGVLGLNTTWEH VSTEVRDYVERQEAQLEWVLGLLHALLSCTFLLVLRASFSYMDSYNQDIRFDNIYISTYFCQID ERRKKLGKRTLLPLRKAEKKSLIFPCKPTIQASEMSSLARELLETLPVLLLLLVLCGLDWALYS VFDTIRQHSFLQYSFQSSHKLEVKVEGDSMLARLLRKTIGALNTSSDTGVESNNMPCLPQPVGL DARAYWKVTYPIGLLLCLCLAQAFGYRLRRVIAAFYFPKREKKRVLFLYNELLRKRAAFTKLRR AAIVRRAQQQRAPRHHLVDTLHRRCPVLRRWLRRRCVVCQAPETTESHVCPTPDCQAVYCRSCW DDMRQQCPVCTPREELSSSAFSDSNDDTTYAE hide sequence

RefSeq Acc Id:

XP_005411617 ⟸ XM_005411560

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKSRRWWCCTAWHHIFTYKMSKTRKERKEPPFITPSEGTGDVPYNLSRLPLISLARAASIYCSL
NLLDSGLGAIGWGTSPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYEGPVANLKHNLNEVVAS
LGCTVELQINNTRATWRISTAPLRAVFKDLLGSKESLKAETRNISTAFKDLDAQVSSEAGYEPE
TAMDSQGTAQGAEARKAPSTKLHLSTQKMFELKTKLRCSYVVNRAILNCHQWFDRKHEQCMQRI
WVPLLNHLLCLPMKFKFFCGIAKVMEVWCRSRIPVEGNFGQTYDSLNQSIHGLDGEFSANIDIK
EEKQAGVLGLNTTWEHVSTEVRDYVERQEAQLEWVLGLLHALLSCTFLLVLRASFSYMDSYNQD
IRFDNIYISTYFCQIDERRKKLGKRTLLPLRKAEKKSLIFPCKPTIQASEMSSLARELLETLPV
LLLLLVLCGLDWALYSVFDTIRQHSFLQYSFQSSHKLEVKVEGDSMLARLLRKTIGALNTSSDT
GVESNNMRFWLPAPEGHRSLLLSQVLSVPAREEAGPVPLQRAIEEESSLHEAEAGCYREAGPAA
EGSTPPPGGHPAPPLPGAAPLAAPALRGVPGPRDDRVPRVPDARLPGRVLPVVLGRHAAAVPGL
HASRGALLFRLQRQQRRHHLRGVKGWARFPLCYTLNKAPCSPLPPVLRGDRGWAGRCPRASSAW
AGRQRGSQGRVRTPGEGRQGATPKPIGPSSPQPS

hide sequence

RefSeq Acc Id:

XP_005411623 ⟸ XM_005411566

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLGKEGRLFVLGYALAAIYEGPVANLKHNLNEVVASLGCTVELQINNTRATWRISTAPLRAVFK
DLLGSKESLKAETRNISTAFKDLDAQVSSEAGYEPETAMDSQGTAQGAEARKAPSTKLHLSTQK
MFELKTKLRCSYVVNRAILNCHQWFDRKHEQCMQRIWVPLLNHLLCLPMKFKFFCGIAKVMEVW
CRSRIPVEGNFGQTYDSLNQSIHGLDGEFSANIDIKEEKQAGVLGLNTTWEHVSTEVRDYVERQ
EAQLEWVLGLLHALLSCTFLLVLRASFSYMDSYNQDIRFDNIYISTYFCQIDERRKKLGKRTLL
PLRKAEKKSLIFPCKPTIQASEMSSLARELLETLPVLLLLLVLCGLDWALYSVFDTIRQHSFLQ
YSFQSSHKLEVKVEGDSMLARLLRKTIGALNTSSDTGVESNNMRFWLPAPEGHRSLLLSQVLSV
PAREEAGPVPLQRAIEEESSLHEAEAGCYREAGPAAEGSTPPPGGHPAPPLPGAAPLAAPALRG
VPGPRDDRVPRVPDARLPGRVLPVVLGRHAAAVPGLHASRGALLFRLQRQQRRHHLRGVKGWAR
FPLCYTLNKAPCSPLPPVLRGDRGWAGRCPRASSAWAGRQRGSQGRVRTPGEGRQGATPKPIGP
SSPQPS

hide sequence

RefSeq Acc Id:

ENSCLAP00000008992 ⟸ ENSCLAT00000009120

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006280	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009120	ENTREZGENE
	ENSCLAT00000009120.1	UniProtKB/TrEMBL
InterPro	DC_STAMP-like	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
NCBI Gene	Dcst1	ENTREZGENE
PANTHER	DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN	UniProtKB/TrEMBL
	E3 UBIQUITIN-PROTEIN LIGASE DCST1	UniProtKB/TrEMBL
Pfam	DC_STAMP	UniProtKB/TrEMBL
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
UniProt	A0A8C2V2T5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar