Pdcd6 (programmed cell death 6) - Rat Genome Database

Name: Pdcd6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Pdcd6 (programmed cell death 6) Chinchilla lanigera

Analyze

Symbol:

Pdcd6

Name:

programmed cell death 6

RGD ID:

8897309

Description:

ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to heat (ortholog); COPII vesicle coating (ortholog); ASSOCIATED WITH dopamine transporter deficiency syndrome (ortholog); interstitial lung disease 2 (ortholog); FOUND IN COPII vesicle coat (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

programmed cell death protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDCD6 (programmed cell death 6)	NCBI	Ortholog
Mus musculus (house mouse):	Pdcd6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pdcd6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDCD6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDCD6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdcd6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDCD6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDCD6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdcd6 (programmed cell death 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955504	74,944 - 98,282 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955504	75,378 - 94,654 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dopamine transporter deficiency syndrome (ISO)

interstitial lung disease 2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (ISO)

cellular response to heat (ISO)

COPII vesicle coating (ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (ISO)

intracellular protein transport (ISO)

negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

negative regulation of TOR signaling (ISO)

negative regulation of vascular endothelial growth factor receptor signaling pathway (ISO)

neural crest cell development (ISO)

neural crest formation (ISO)

positive regulation of angiogenesis (ISO)

positive regulation of endothelial cell migration (ISO)

positive regulation of endothelial cell proliferation (ISO)

positive regulation of protein monoubiquitination (ISO)

response to calcium ion (ISO)

vascular endothelial growth factor receptor-2 signaling pathway (ISO)

Cellular Component

COPII vesicle coat (ISO)

Cul3-RING ubiquitin ligase complex (ISO)

cytoplasm (ISO)

cytoplasmic vesicle (ISO)

cytosol (ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum exit site (ISO)

nucleoplasm (ISO)

nucleus (ISO)

perinuclear region of cytoplasm (ISO)

Molecular Function

calcium ion binding (ISO)

calcium-dependent protein binding (ISO)

identical protein binding (ISO)

magnesium ion binding (ISO)

protein binding (ISO)

protein dimerization activity (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

protein-macromolecule adaptor activity (ISO)

protein-membrane adaptor activity (ISO)

ubiquitin-like ligase-substrate adaptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Pdcd6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955504	74,944 - 98,282 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955504	75,378 - 94,654 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDCD6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	271,646 - 314,974 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	271,621 - 314,974 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	271,761 - 315,089 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	324,736 - 368,089 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	324,738 - 368,089	NCBI
Celera	5	370,282 - 413,335 (+)	NCBI		Celera
Cytogenetic Map	5	p15.33	NCBI
HuRef	5	258,986 - 302,543 (+)	NCBI		HuRef
CHM1_1	5	267,028 - 314,783 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	261,673 - 305,205 (+)	NCBI		T2T-CHM13v2.0

Pdcd6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	74,451,240 - 74,465,445 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	74,451,628 - 74,465,699 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	74,303,121 - 74,317,326 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	74,303,509 - 74,317,580 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	74,440,569 - 74,454,774 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	74,769,130 - 74,790,911 (-)	NCBI		MGSCv36	mm8
Celera	13	76,632,567 - 76,646,789 (-)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	40.15	NCBI

Pdcd6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	30,795,105 - 30,810,771 (+)	NCBI		GRCr8
mRatBN7.2	1	28,966,518 - 28,982,188 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	28,966,518 - 28,982,189 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	28,767,781 - 28,783,445 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	34,767,645 - 34,783,309 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	28,968,411 - 28,984,075 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	31,576,183 - 31,591,852 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,576,183 - 31,591,849 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	33,002,331 - 33,017,997 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	29,769,911 - 29,785,577 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	29,772,917 - 29,788,523 (+)	NCBI
Celera	1	27,618,297 - 27,633,964 (+)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

PDCD6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	490,544 - 533,958 (+)	NCBI		NHGRI_mPanPan1-v2

PDCD6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	11,909,657 - 11,929,850 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	11,909,934 - 11,929,855 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	16,422,880 - 16,443,067 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	11,811,327 - 11,831,550 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	11,811,327 - 11,831,555 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	11,864,243 - 11,884,414 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	11,850,310 - 11,870,511 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	12,052,312 - 12,072,529 (-)	NCBI		UU_Cfam_GSD_1.0

Pdcd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	244,968,082 - 244,982,736 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936815	1,129,352 - 1,143,992 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936815	1,129,367 - 1,144,020 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDCD6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	79,818,958 - 79,835,746 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	79,818,960 - 79,832,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDCD6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	204,512 - 215,059 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	200,926 - 214,718 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	27,331,351 - 27,341,948 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdcd6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	99,860 - 120,963 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	99,835 - 120,963 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005406987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005406988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005406990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005406991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01064814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01118861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000004687 ⟹ ENSCLAP00000004601

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955504	74,944 - 98,282 (+)	Ensembl

RefSeq Acc Id:

XM_005406987 ⟹ XP_005407044

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955504	75,391 - 94,654 (+)	NCBI

Sequence:

show sequence

TGTCCCCGGAAGTGGCGTGGGCGCCAGGTCCTAGCAAAGGCGGAAGCAGAGCCGCTCCACCATA
GTCTTTTCTTCGCCGGTTCGCTGCCCATGGCCGCCTACTCCTACCGCCCGGGCCCGGGCCCGGG
CCCTGCTGCGGGCGCTGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTCTTTCAGCGGGTTGAT
AAAGACAGGAGTGGGGTGATATCAGACAACGAGCTTCAGCAAGCATTGTCCAATGGCACATGGA
CTCCATTTAATCCAGTGACTGTGAGGTCAATCATTTCTATGTTTGACCGAGAGAACAAAGCTGG
CGTCAACTTCAGCGAGTTTACAGGTGTGTGGAAGTACATCACGGATTGGCAGAACGTCTTCCGT
ACCTACGACAGGGACAACTCGGGGATGATCGACAAGAACGAGCTCAAGCAAGCACTCTCAGGTT
TTGGCTACCGGCTCTCTGACCAGTTCCATGACATCCTCATCCGCAAGTTTGACAGACAAGGACG
AGGGCAGATTGCCTTTGATGACTTCATACAGGGCTGCATAGTCCTGCAGAGGCTGACAGACATA
TTCAGACGCTACGACACAGATCAGGATGGCTGGATCCAGGTATCTTATGAGCAGTATCTCTCCA
TGGTCTTCAGCATCGTATAATGCAGGCCTCACGAACAGCAGCATCATGTACAAGAAGATGGAAA
ATGCCAAATCCCTTACCTGTCATGAAGTGGGACACAGACAGTTAGATGCTGTTATTCCTCAGGC
TCTGTAATTGATAACTTGGGGACCAGCTGTACATATGTGAGTAACTGATGAGTGCTCTTGCGTT
GTCATAGTAACTGCATTGCTGTTGTAACAGACCTTGGGCTGTGGCTCATTGTGCCATGCGGCAA
GATGCAGTCAAGGCTCAGATTTCTGCTTGGGAAAATGCACTCCGTGCTTTTTTAGACATCTTCA
GTTCTGCAGTGGAAATGCTTTTATTAGCCAATAGGATTTAAAAATAATACAGAACTTGCACAGA
GGCTTTTCATGTGCCTTACTTTTTTAAAAAAAAAGATTATCATGTTCCCTGAAATATGTAACAT
GAGCAATAAAGCGGTGGTACAGACTTG

hide sequence

RefSeq Acc Id:

XM_005406988 ⟹ XP_005407045

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955504	75,389 - 94,654 (+)	NCBI

Sequence:

show sequence

GGTGTCCCCGGAAGTGGCGTGGGCGCCAGGTCCTAGCAAAGGCGGAAGCAGAGCCGCTCCACCA
TAGTCTTTTCTTCGCCGGTTCGCTGCCCATGGCCGCCTACTCCTACCGCCCGGGCCCGGGCCCG
GGCCCTGCTGCGGGCGCTGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTCTTTCAGCGGGTTG
ATAAAGACAGGAGTGGGGTGATATCAGACAACGAGCTTCAGCAAGCATTGTCCAATGGCACATG
GACTCCATTTAATCCAGTGACTGTGAGGTCAATCATTTCTATGTTTGACCGAGAGAACAAAGCT
GGCGTCAACTTCAGCGAGTTTACAGGTGTGTGGAAGTACATCACGGATTGGCAGAACGTCTTCC
GTACCTACGACAGGGACAACTCGGGGATGATCGACAAGAACGAGCTCAAGCAAGCACTCTCAGG
CTACCGGCTCTCTGACCAGTTCCATGACATCCTCATCCGCAAGTTTGACAGACAAGGACGAGGG
CAGATTGCCTTTGATGACTTCATACAGGGCTGCATAGTCCTGCAGAGGCTGACAGACATATTCA
GACGCTACGACACAGATCAGGATGGCTGGATCCAGGTATCTTATGAGCAGTATCTCTCCATGGT
CTTCAGCATCGTATAATGCAGGCCTCACGAACAGCAGCATCATGTACAAGAAGATGGAAAATGC
CAAATCCCTTACCTGTCATGAAGTGGGACACAGACAGTTAGATGCTGTTATTCCTCAGGCTCTG
TAATTGATAACTTGGGGACCAGCTGTACATATGTGAGTAACTGATGAGTGCTCTTGCGTTGTCA
TAGTAACTGCATTGCTGTTGTAACAGACCTTGGGCTGTGGCTCATTGTGCCATGCGGCAAGATG
CAGTCAAGGCTCAGATTTCTGCTTGGGAAAATGCACTCCGTGCTTTTTTAGACATCTTCAGTTC
TGCAGTGGAAATGCTTTTATTAGCCAATAGGATTTAAAAATAATACAGAACTTGCACAGAGGCT
TTTCATGTGCCTTACTTTTTTAAAAAAAAAGATTATCATGTTCCCTGAAATATGTAACATGAGC
AATAAAGCGGTGGTACAGACTTG

hide sequence

RefSeq Acc Id:

XM_005406990 ⟹ XP_005407047

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955504	75,380 - 94,654 (+)	NCBI

Sequence:

show sequence

TGCACTTCCGGTGTCCCCGGAAGTGGCGTGGGCGCCAGGTCCTAGCAAAGGCGGAAGCAGAGCC
GCTCCACCATAGTCTTTTCTTCGCCGGTTCGCTGCCCATGGCCGCCTACTCCTACCGCCCGGGC
CCGGGCCCGGGCCCTGCTGCGGGCGCTGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTCTTTC
AGCGGGTTGATAAAGACAGGAGTGGGGTGATATCAGACAACGAGCTTCAGCAAGCATTGTCCAA
TGGCACATGGACTCCATTTAATCCAGTGACTGTGAGGTCAATCATTTCTATGTTTGACCGAGAG
AACAAAGCTGGCGTCAACTTCAGCGAGTTTACAGGTGTGTGGAAGTACATCACGGATTGGCAGA
ACGTCTTCCGTACCTACGACAGGGACAACTCGGGGATGATCGACAAGAACGAGCTCAAGCAAGC
ACTCTCAGGTTTTGAGGCTGACAGACATATTCAGACGCTACGACACAGATCAGGATGGCTGGAT
CCAGGTATCTTATGAGCAGTATCTCTCCATGGTCTTCAGCATCGTATAATGCAGGCCTCACGAA
CAGCAGCATCATGTACAAGAAGATGGAAAATGCCAAATCCCTTACCTGTCATGAAGTGGGACAC
AGACAGTTAGATGCTGTTATTCCTCAGGCTCTGTAATTGATAACTTGGGGACCAGCTGTACATA
TGTGAGTAACTGATGAGTGCTCTTGCGTTGTCATAGTAACTGCATTGCTGTTGTAACAGACCTT
GGGCTGTGGCTCATTGTGCCATGCGGCAAGATGCAGTCAAGGCTCAGATTTCTGCTTGGGAAAA
TGCACTCCGTGCTTTTTTAGACATCTTCAGTTCTGCAGTGGAAATGCTTTTATTAGCCAATAGG
ATTTAAAAATAATACAGAACTTGCACAGAGGCTTTTCATGTGCCTTACTTTTTTAAAAAAAAAG
ATTATCATGTTCCCTGAAATATGTAACATGAGCAATAAAGCGGTGGTACAGACTTG

hide sequence

RefSeq Acc Id:

XM_005406991 ⟹ XP_005407048

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955504	75,378 - 94,654 (+)	NCBI

Sequence:

show sequence

AATGCACTTCCGGTGTCCCCGGAAGTGGCGTGGGCGCCAGGTCCTAGCAAAGGCGGAAGCAGAG
CCGCTCCACCATAGTCTTTTCTTCGCCGGTTCGCTGCCCATGGCCGCCTACTCCTACCGCCCGG
GCCCGGGCCCGGGCCCTGCTGCGGGCGCTGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTCTT
TCAGCGGGTTGATAAAGACAGGAGTGGGGTGATATCAGACAACGAGCTTCAGCAAGCATTGTCC
AATGGCACATGGACTCCATTTAATCCAGTGACTGTGAGGTCAATCATTTCTATGTTTGACCGAG
AGAACAAAGCTGGCGTCAACTTCAGCGAGTTTACAGGTGTGTGGAAGTACATCACGGATTGGCA
GAACGTCTTCCGTACCTACGACAGGGACAACTCGGGGATGATCGACAAGAACGAGCTCAAGCAA
GCACTCTCAGAGGCTGACAGACATATTCAGACGCTACGACACAGATCAGGATGGCTGGATCCAG
GTATCTTATGAGCAGTATCTCTCCATGGTCTTCAGCATCGTATAATGCAGGCCTCACGAACAGC
AGCATCATGTACAAGAAGATGGAAAATGCCAAATCCCTTACCTGTCATGAAGTGGGACACAGAC
AGTTAGATGCTGTTATTCCTCAGGCTCTGTAATTGATAACTTGGGGACCAGCTGTACATATGTG
AGTAACTGATGAGTGCTCTTGCGTTGTCATAGTAACTGCATTGCTGTTGTAACAGACCTTGGGC
TGTGGCTCATTGTGCCATGCGGCAAGATGCAGTCAAGGCTCAGATTTCTGCTTGGGAAAATGCA
CTCCGTGCTTTTTTAGACATCTTCAGTTCTGCAGTGGAAATGCTTTTATTAGCCAATAGGATTT
AAAAATAATACAGAACTTGCACAGAGGCTTTTCATGTGCCTTACTTTTTTAAAAAAAAAGATTA
TCATGTTCCCTGAAATATGTAACATGAGCAATAAAGCGGTGGTACAGACTTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005407044	(Get FASTA)	NCBI Sequence Viewer
	XP_005407045	(Get FASTA)	NCBI Sequence Viewer
	XP_005407047	(Get FASTA)	NCBI Sequence Viewer
	XP_005407048	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004601
	ENSCLAP00000004601.1

RefSeq Acc Id:	XP_005407047 ⟸ XM_005406990
- Peptide Label:	isoform X3
- Sequence:	show sequence MAAYSYRPGPGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVR SIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFEADRHIQT LRHRSGWLDPGIL hide sequence

RefSeq Acc Id:	XP_005407048 ⟸ XM_005406991
- Peptide Label:	isoform X4
- Sequence:	show sequence MHFRCPRKWRGRQVLAKAEAEPLHHSLFFAGSLPMAAYSYRPGPGPGPAAGAALPDQSFLWNVF QRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQ NVFRTYDRDNSGMIDKNELKQALSEADRHIQTLRHRSGWLDPGIL hide sequence

RefSeq Acc Id:	XP_005407045 ⟸ XM_005406988
- Peptide Label:	isoform X2
- Sequence:	show sequence MAAYSYRPGPGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVR SIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGYRLSDQFHD ILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV hide sequence

RefSeq Acc Id:	XP_005407044 ⟸ XM_005406987
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UTL3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAYSYRPGPGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVR SIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV hide sequence

RefSeq Acc Id:

ENSCLAP00000004601 ⟸ ENSCLAT00000004687

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003275	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004687	ENTREZGENE
	ENSCLAT00000004687.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	Pdcd6	ENTREZGENE
PANTHER	PEFLIN	UniProtKB/TrEMBL
	PROGRAMMED CELL DEATH PROTEIN 6	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8C2UTL3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar