Bloc1s6 (biogenesis of lysosomal organelles complex 1 subunit 6) - Rat Genome Database

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Gene: Bloc1s6 (biogenesis of lysosomal organelles complex 1 subunit 6) Chinchilla lanigera
Analyze
Symbol: Bloc1s6
Name: biogenesis of lysosomal organelles complex 1 subunit 6
RGD ID: 8874933
Description: ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); adenosine metabolic process (ortholog); amino acid metabolic process (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); cell-cell contact zone (ortholog); contractile ring (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin; biogenesis of lysosome-related organelles complex 1 subunit 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554097,899,601 - 7,913,966 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554097,902,125 - 7,913,966 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bloc1s6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554097,899,601 - 7,913,966 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554097,902,125 - 7,913,966 (-)NCBIChiLan1.0ChiLan1.0
BLOC1S6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,587,123 - 45,609,716 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1545,587,214 - 45,615,945 (+)EnsemblGRCh38hg38GRCh38
GRCh371545,879,321 - 45,901,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361543,666,709 - 43,689,201 (+)NCBINCBI36Build 36hg18NCBI36
Build 341543,666,708 - 43,689,200NCBI
Celera1522,770,564 - 22,793,057 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1522,702,017 - 22,724,511 (+)NCBIHuRef
CHM1_11545,997,621 - 46,020,116 (+)NCBICHM1_1
T2T-CHM13v2.01543,395,284 - 43,417,878 (+)NCBIT2T-CHM13v2.0
Bloc1s6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,580,425 - 122,591,407 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,580,423 - 122,591,395 (+)EnsemblGRCm39 Ensembl
GRCm382122,738,505 - 122,749,487 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,738,503 - 122,749,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,564,241 - 122,575,223 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362122,429,955 - 122,439,540 (+)NCBIMGSCv36mm8
Celera2123,933,064 - 123,944,057 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.66NCBI
Bloc1s6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83130,269,979 - 130,280,109 (+)NCBIGRCr8
mRatBN7.23109,816,397 - 109,826,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3109,816,366 - 109,828,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3113,712,759 - 113,722,845 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03122,308,293 - 122,318,379 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03119,968,666 - 119,978,752 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03114,869,478 - 114,880,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3114,869,459 - 114,881,590 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03121,407,586 - 121,418,326 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,706,842 - 109,716,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13109,612,414 - 109,622,544 (+)NCBI
Celera3108,694,425 - 108,704,523 (+)NCBICelera
Cytogenetic Map3q35NCBI
BLOC1S6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21634,761,845 - 34,845,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11538,938,562 - 39,022,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01524,469,225 - 24,553,163 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11542,862,114 - 42,882,321 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1542,862,112 - 42,882,316 (+)Ensemblpanpan1.1panPan2
BLOC1S6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,861,119 - 11,949,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,811,339 - 11,937,353 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,852,612 - 11,967,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,999,081 - 12,114,309 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,948,076 - 12,141,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,919,258 - 12,035,681 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03012,025,057 - 12,141,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03012,145,073 - 12,262,260 (+)NCBIUU_Cfam_GSD_1.0
Bloc1s6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864090,361,030 - 90,378,186 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364718,209,057 - 8,226,353 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364718,209,091 - 8,226,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BLOC1S6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,165,994 - 126,184,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,168,944 - 126,184,813 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21140,713,389 - 140,718,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BLOC1S6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12637,605,891 - 37,622,302 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2637,604,412 - 37,622,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048103,442,042 - 103,468,952 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bloc1s6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473113,777,656 - 13,785,366 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473113,775,414 - 13,789,380 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022431   ⟹   ENSCLAP00000022226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554097,899,601 - 7,913,966 (-)Ensembl
RefSeq Acc Id: XM_005376726   ⟹   XP_005376783
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554097,902,125 - 7,913,966 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005376727   ⟹   XP_005376784
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554097,902,125 - 7,912,162 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376783 (Get FASTA)   NCBI Sequence Viewer  
  XP_005376784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022226
  ENSCLAP00000022226.1
Reference Protein Sequences
RefSeq Acc Id: XP_005376783   ⟸   XM_005376726
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VXR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376784   ⟸   XM_005376727
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000022226   ⟸   ENSCLAT00000022431


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015243 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022431 ENTREZGENE
  ENSCLAT00000022431.1 UniProtKB/TrEMBL
InterPro BLOC-1_pallidin UniProtKB/TrEMBL
  Snapin/Pallidin/Snn1 UniProtKB/TrEMBL
NCBI Gene Bloc1s6 ENTREZGENE
PANTHER BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 UniProtKB/TrEMBL
  BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 UniProtKB/TrEMBL
Pfam Snapin_Pallidin UniProtKB/TrEMBL
PIRSF BLOC-1_complex_pallidin UniProtKB/TrEMBL
UniProt A0A8C2VXR9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Bloc1s6  biogenesis of lysosomal organelles complex 1 subunit 6    biogenesis of lysosomal organelles complex-1, subunit 6, pallidin  Symbol and/or name change 5135510 APPROVED