Fbxl20 (F-box and leucine rich repeat protein 20)

Gene: Fbxl20 (F-box and leucine rich repeat protein 20) Chinchilla lanigera

Analyze

Symbol:

Fbxl20

Name:

F-box and leucine rich repeat protein 20

RGD ID:

8850279

Description:

INVOLVED IN behavioral fear response (ortholog); regulation of protein catabolic process at presynapse, modulating synaptic transmission (ortholog); regulation of synaptic vesicle exocytosis (ortholog); FOUND IN glutamatergic synapse (ortholog); presynapse (ortholog); Schaffer collateral - CA1 synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

F-box and leucine-rich repeat protein 20; F-box/LRR-repeat protein 20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	14,097,664 - 14,201,812 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

behavioral fear response (ISO)

regulation of protein catabolic process at presynapse, modulating synaptic transmission (ISO)

regulation of synaptic vesicle exocytosis (ISO)

Cellular Component

glutamatergic synapse (ISO)

presynapse (ISO)

Schaffer collateral - CA1 synapse (ISO)

synapse (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Fbxl20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	14,097,664 - 14,201,812 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXL20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	39,252,663 - 39,402,556 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	39,252,663 - 39,402,523 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	37,408,916 - 37,558,809 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	34,670,366 - 34,811,402 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	34,670,366 - 34,811,402	NCBI
Celera	17	34,069,835 - 34,218,841 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	33,204,406 - 33,351,383 (-)	NCBI		HuRef
CHM1_1	17	37,645,201 - 37,794,114 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	40,116,582 - 40,266,468 (-)	NCBI		T2T-CHM13v2.0

Fbxl20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	97,973,380 - 98,042,014 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	97,973,382 - 98,041,229 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	98,082,554 - 98,150,921 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	98,082,556 - 98,150,403 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	97,943,868 - 98,010,930 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	97,904,633 - 97,966,535 (-)	NCBI		MGSCv36	mm8
Celera	11	107,737,640 - 107,804,596 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.69	NCBI

Fbxl20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	83,577,038 - 83,640,022 (-)	NCBI		GRCr8
mRatBN7.2	10	83,080,568 - 83,143,680 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	83,086,551 - 83,144,162 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	88,025,866 - 88,086,970 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	87,523,950 - 87,585,054 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	82,916,589 - 82,977,699 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	86,036,745 - 86,099,699 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	86,043,235 - 86,098,694 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	85,834,348 - 85,897,313 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	86,863,545 - 86,912,521 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	86,877,914 - 86,926,891 (-)	NCBI
Celera	10	81,843,315 - 81,891,515 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

FBXL20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,551,056 - 25,677,854 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	27,445,207 - 27,579,930 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	17,885,351 - 18,018,891 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	18,097,859 - 18,294,314 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	18,098,172 - 18,285,524 (+)	Ensembl	panpan1.1		panPan2

FBXL20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	23,021,103 - 23,122,768 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	23,021,468 - 23,135,297 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	22,493,150 - 22,597,380 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	23,815,123 - 23,919,645 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	23,814,940 - 23,919,424 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	22,587,188 - 22,691,375 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	22,848,280 - 22,952,715 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	22,973,729 - 23,078,189 (+)	NCBI		UU_Cfam_GSD_1.0

Fbxl20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,451,102 - 22,551,435 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,521,037 - 14,623,108 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,521,037 - 14,623,741 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXL20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	22,874,160 - 22,970,410 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	22,873,395 - 22,972,677 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	23,326,855 - 23,419,458 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXL20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	66,766,879 - 66,909,973 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	66,768,379 - 66,909,000 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	37,687,570 - 37,855,634 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxl20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	3,607,567 - 3,691,684 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	3,606,791 - 3,696,944 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01176814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005394302 ⟹ XP_005394359

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,103,815 - 14,201,807 (-)	NCBI

Sequence:

show sequence

GCCCGAGGTGTGGCCCGCCTGCCACCCCCGGAGCAGGGCCGGGCGCTCGGACCGCCCTCCGCGC
TCTGGGCCATGCACTGCGAGACGCTCGCCTCCCGGCGGCCCCCCAGACCTTCCTGCAGTCTCCC
TTAATGCGATCCACCGGTGCGGTGGCGACATCAGCAGCAGCGCTACCCCTATCCCAAGACGTCC
AGAAAGAGGAGGAAAATGGCTCCGAGCAGGGATCGCCTGCTGCACTTCGGGTTTAAGGCGACCA
TGTTCTCAAATAGCGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTGTTACGGAT
ATTTTCTTTCCTCGATGTCGTTACCTTGTGTCGCTGTGCTCAGGTTTCCAGGGCCTGGAATGTT
CTTGCTCTGGATGGCAGCAACTGGCAGCGAATTGACCTGTTTGATTTCCAGAGGGATATTGAGG
GCCGAGTAGTGGAGAATATTTCAAAACGATGTGGAGGATTTTTACGAAAGTTAAGTCTTCGTGG
GTGTCTTGGAGTAGGAGACAATGCATTAAGGACATTTGCACAAAACTGTAGAAATATTGAAGTA
CTGAATTTAAATGGATGTACAAAGACTACAGATGCTACATGTACTAGCCTTAGCAAGTTCTGTT
CCAAACTCAGGCACCTAGACCTGGCTTCCTGTACGTCGATAACAAACATGTCTCTCAAAGCTCT
GAGCGAGGGGTGTCCACTGCTGGAACAACTGAACATTTCCTGGTGTGACCAAGTAACCAAGGAT
GGCATTCAAGCACTAGTGAGAGGCTGCAGCGGGCTCAAGGCCTTATTCTTAAAAGGCTGCACAC
AGCTAGAAGATGAAGCTCTCAAGTACATAGGTGCACATTGTCCTGAGCTGGTGACTCTGAACTT
GCAGACTTGCTTACAAATCACAGATGAAGGTCTTATCACTATATGCAGAGGGTGCCATAAGTTG
CAGTCCCTCTGTGCCTCTGGCTGCTCCAACATCACAGATGCCATCCTGAATGCGCTAGGTCAGA
ACTGCCCTCGACTTAGAATATTAGAAGTCGCAAGATGTTCTCAACTAACAGATGTGGGTTTTAC
CACCTTGGCCAGGAATTGCCATGAGCTTGAGAAGATGGACCTGGAAGAATGTGTTCAGATAACT
GATAGCACATTAATCCAACTTTCCATACACTGTCCTCGACTTCAAGTATTGAGTCTGTCCCACT
GTGAGCTCATCACAGATGATGGCATCCGTCACCTGGGGAACGGGGCCTGTGCGCACGACCAGCT
GGAGGTGATCGAGCTGGACAACTGCCCCCTCATCACTGACGCGTCCCTGGAGCACCTGAAGAGC
TGCCACAGCCTGGAGCGGATCGAGCTGTACGACTGCCAGCAGATCACTCGCGCGGGGATCAAGA
GACTCAGGACCCACTTACCCAACATTAAAGTCCACGCCTACTTCGCACCTGTCACTCCACCCCC
GTCAGTCGGGGGCAGCAGACAGCGCTTCTGCAGATGCTGCATCATCCTATGACACTGGAGGGCG
CAGCCTCGGTGAACTGAGTACTTAAGAACACTCTAGAGTTACCTGGTGTCTCCAGCAGAAGTGA
CCCCAGTGTTCTGGGCGAGGGTTACAGAGTGAGACAGTGACCAGGTCCCCAGAGCCACACGTAC
GTATGCATCCACAACCTACCCCACCCACTCGAGCTCTGTGGCCATGGGACTGAAGCTCGTGCTG
GCTTTACCAAGTGGATTGGTAAAACTTAACTGTTCCTTTCAGACACACCCAGAACAGCACAGGC
CAACACAGAGGGAGGGCACTCCAGCAGACCCAGTGTTACTGCTGTGATGGTTTCTTTATTTTGT
TAAGGGGTTTCTTTGGGGATTTTGGAACAGTAACTGCAGTCATCCAGGGTCAAGGAAAGCATGG
AAAAACGATACATGATGTATCCAGGGACCAGAAAGAAATTTCTTTGCATCCTAGACATGGTAGC
CATCACTCTGAAATGACTACATAGCTTCTGTGCTTCCTGTTTCCATGCCAACATGCTCAGCATG
CTCGCAAAGAAGGCTGCTCATTCCTCCTGTGTTTTAGTACCTAGCCCAGGGGTCTCTGAAATAC
CACATTGAAACTGCTGCGGTCCAGATGCGGTTACTCACTGAGATTGCACTGTCTGTGTCACATC
GCGCACCTGTCTTCCACTCTTCGTGGCTCCCCCTGCACTCTTGCTCAGTGTGTCACCTGGTCAC
AGTCTGCTCCTCACACTCGGTTGTTACTCTTGGGCTATTGTGTTTACAGTTTGCATTTTGGATG
ATTAGTTGAGGTTATCAAACATTTTTAAAAGACATTATCAATAAATATTTTTTTAATTTGAAAT
TCTA

hide sequence

RefSeq Acc Id:

XM_005394303 ⟹ XP_005394360

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,103,815 - 14,201,139 (-)	NCBI

Sequence:

show sequence

TGGCAGGTGGGGAGTGTTTTTGTTTTGGGTTGAAGTTGAGGCTGAGGAGAGAGCCCAGCTAGCG
ACAAGCGGTCATCGCGGCCGCGGGCGCCGCGGGCGGTGGCGGAGGAGGCCCTGCCAGAGCCTAG
AGGTCGCTCCTCCCCGCGCGACTGTCCCAGCGGCGTTCCTGCTCCGCCGCGGCCGCCGCCTCCG
GGTCCCGGAACTCGCGGGCCTGCCGAGGGCCGCTCCGCTTTGCACTCCGCACGCCGCAGCGCCC
TGCCCGGGCCGCACCCGCCGGCCTCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTT
GAGATGTTCTCAAATAGCGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTGTTAC
GGATATTTTCTTTCCTCGATGTCGTTACCTTGTGTCGCTGTGCTCAGGTTTCCAGGGCCTGGAA
TGTTCTTGCTCTGGATGGCAGCAACTGGCAGCGAATTGACCTGTTTGATTTCCAGAGGGATATT
GAGGGCCGAGTAGTGGAGAATATTTCAAAACGATGTGGAGGATTTTTACGAAAGTTAAGTCTTC
GTGGGTGTCTTGGAGTAGGAGACAATGCATTAAGGACATTTGCACAAAACTGTAGAAATATTGA
AGTACTGAATTTAAATGGATGTACAAAGACTACAGATGCTACATGTACTAGCCTTAGCAAGTTC
TGTTCCAAACTCAGGCACCTAGACCTGGCTTCCTGTACGTCGATAACAAACATGTCTCTCAAAG
CTCTGAGCGAGGGGTGTCCACTGCTGGAACAACTGAACATTTCCTGGTGTGACCAAGTAACCAA
GGATGGCATTCAAGCACTAGTGAGAGGCTGCAGCGGGCTCAAGGCCTTATTCTTAAAAGGCTGC
ACACAGCTAGAAGATGAAGCTCTCAAGTACATAGGTGCACATTGTCCTGAGCTGGTGACTCTGA
ACTTGCAGACTTGCTTACAAATCACAGATGAAGGTCTTATCACTATATGCAGAGGGTGCCATAA
GTTGCAGTCCCTCTGTGCCTCTGGCTGCTCCAACATCACAGATGCCATCCTGAATGCGCTAGGT
CAGAACTGCCCTCGACTTAGAATATTAGAAGTCGCAAGATGTTCTCAACTAACAGATGTGGGTT
TTACCACCTTGGCCAGGAATTGCCATGAGCTTGAGAAGATGGACCTGGAAGAATGTGTTCAGAT
AACTGATAGCACATTAATCCAACTTTCCATACACTGTCCTCGACTTCAAGTATTGAGTCTGTCC
CACTGTGAGCTCATCACAGATGATGGCATCCGTCACCTGGGGAACGGGGCCTGTGCGCACGACC
AGCTGGAGGTGATCGAGCTGGACAACTGCCCCCTCATCACTGACGCGTCCCTGGAGCACCTGAA
GAGCTGCCACAGCCTGGAGCGGATCGAGCTGTACGACTGCCAGCAGATCACTCGCGCGGGGATC
AAGAGACTCAGGACCCACTTACCCAACATTAAAGTCCACGCCTACTTCGCACCTGTCACTCCAC
CCCCGTCAGTCGGGGGCAGCAGACAGCGCTTCTGCAGATGCTGCATCATCCTATGACACTGGAG
GGCGCAGCCTCGGTGAACTGAGTACTTAAGAACACTCTAGAGTTACCTGGTGTCTCCAGCAGAA
GTGACCCCAGTGTTCTGGGCGAGGGTTACAGAGTGAGACAGTGACCAGGTCCCCAGAGCCACAC
GTACGTATGCATCCACAACCTACCCCACCCACTCGAGCTCTGTGGCCATGGGACTGAAGCTCGT
GCTGGCTTTACCAAGTGGATTGGTAAAACTTAACTGTTCCTTTCAGACACACCCAGAACAGCAC
AGGCCAACACAGAGGGAGGGCACTCCAGCAGACCCAGTGTTACTGCTGTGATGGTTTCTTTATT
TTGTTAAGGGGTTTCTTTGGGGATTTTGGAACAGTAACTGCAGTCATCCAGGGTCAAGGAAAGC
ATGGAAAAACGATACATGATGTATCCAGGGACCAGAAAGAAATTTCTTTGCATCCTAGACATGG
TAGCCATCACTCTGAAATGACTACATAGCTTCTGTGCTTCCTGTTTCCATGCCAACATGCTCAG
CATGCTCGCAAAGAAGGCTGCTCATTCCTCCTGTGTTTTAGTACCTAGCCCAGGGGTCTCTGAA
ATACCACATTGAAACTGCTGCGGTCCAGATGCGGTTACTCACTGAGATTGCACTGTCTGTGTCA
CATCGCGCACCTGTCTTCCACTCTTCGTGGCTCCCCCTGCACTCTTGCTCAGTGTGTCACCTGG
TCACAGTCTGCTCCTCACACTCGGTTGTTACTCTTGGGCTATTGTGTTTACAGTTTGCATTTTG
GATGATTAGTTGAGGTTATCAAACATTTTTAAAAGACATTATCAATAAATATTTTTTTAATTTG
AAATTCTA

hide sequence

RefSeq Acc Id:

XM_013519186 ⟹ XP_013374640

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,097,664 - 14,201,812 (-)	NCBI

Sequence:

show sequence

CCGGCGCCCGAGGTGTGGCCCGCCTGCCACCCCCGGAGCAGGGCCGGGCGCTCGGACCGCCCTC
CGCGCTCTGGGCCATGCACTGCGAGACGCTCGCCTCCCGGCGGCCCCCCAGACCTTCCTGCAGT
CTCCCTTAATGCGATCCACCGGTGCGGTGGCGACATCAGCAGCAGCGCTACCCCTATCCCAAGA
CGTCCAGAAAGAGGAGGAAAATGGCTCCGAGCAGGGATCGCCTGCTGCACTTCGGGTTTAAGGC
GACCATGTTCTCAAATAGCGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTGTTA
CGGATATTTTCTTTCCTCGATGTCGTTACCTTGTGTCGCTGTGCTCAGGTTTCCAGGGCCTGGA
ATGTTCTTGCTCTGGATGGCAGCAACTGGCAGCGAATTGACCTGTTTGATTTCCAGAGGGATAT
TGAGGGCCGAGTAGTGGAGAATATTTCAAAACGATGTGGAGGATTTTTACGAAAGTTAAGTCTT
CGTGGGTGTCTTGGAGTAGGAGACAATGCATTAAGGACATTTGCACAAAACTGTAGAAATATTG
AAGTACTGAATTTAAATGGATGTACAAAGACTACAGATGCTACATGTACTAGCCTTAGCAAGTT
CTGTTCCAAACTCAGGCACCTAGACCTGGCTTCCTGTACGTCGATAACAAACATGTCTCTCAAA
GCTCTGAGCGAGGGGTGTCCACTGCTGGAACAACTGAACATTTCCTGGTGTGACCAAGTAACCA
AGGATGGCATTCAAGCACTAGTGAGAGGCTGCAGCGGGCTCAAGGCCTTATTCTTAAAAGGCTG
CACACAGCTAGAAGATGAAGCTCTCAAGTACATAGGTGCACATTGTCCTGAGCTGGTGACTCTG
AACTTGCAGACTTGCTTACAAATCACAGATGAAGGTCTTATCACTATATGCAGAGGGTGCCATA
AGTTGCAGTCCCTCTGTGCCTCTGGCTGCTCCAACATCACAGATGCCATCCTGAATGCGCTAGG
TCAGAACTGCCCTCGACTTAGAATATTAGAAGTCGCAAGATGTTCTCAACTAACAGATGTGGGT
TTTACCACCTTGGCCAGGAATTGCCATGAGCTTGAGAAGATGGACCTGGAAGAATGTGTTCAGA
TAACTGATAGCACATTAATCCAACTTTCCATACACTGTCCTCGACTTCAAGTATTGAGTCTGTC
CCACTGTGAGCTCATCACAGATGATGGCATCCGTCACCTGGGGAACGGGGCCTGTGCGCACGAC
CAGCTGGAGGTGATCGAGCTGGACAACTGCCCCCTCATCACTGACGCGTCCCTGGAGCACCTGA
AGAGCTGCCACAGCCTGGAGCGGATCGAGCTGTACGACTGCCAGCAGATCACTCGCGCGGGGAT
CAAGAGACTCAGGGCGGAGTTCCTTACGTCCCCTCACCAGGAGTCACCCAGGTAGAGACCAGCA
CCACCGAAAGAGTCACCATCTGCCTGAGAGGCTCGGAAGGAGACTTTATGGAAGAGGTGGGCCG
GGAAAGTGCCCAAGCTGCACTTCCTCCTGCTGTGCCCCAAGGCCAGGGAGGTCGAGGTGATGTC
TTTTTTATTGTGACCTTAGGAGAAAGCTTTCCCCTTCTCACTGCTCACCCTGTCTGCACCACAC
TGCTGCTCATACGGATGTGTTTCTCCGCCTAGCCCTCCCCAGGCCTTGAAGTTGATAGTAACTT
TTTTTCTTTTATTGGCACTAGAGAATGAGACCCTGACGTCTTAGAAAATCCTAACTTGAGAGTT
TCTAACTGGTATGGTTTGATTAATTAATTTAACCCTTCCCCAGACAAATGATTTTCTTTTCTAG
TGCTAAGAATAGATCTTCACTGAGTGAAACCTTTGCTGCTACTTTCCTGGGTTTACATGAGGTT
TTCCCTTCAGAATGCTTCTTATCTGTACTTCTCTGATGACTGTTAATCTCTCATAAGTACAGGA
AGGGGTGTGCCTGTGATTTCTCTTTTTCCCTTCACCCCCACTTCACACACTAACACCACTGTGG
GTGGGCGCACTGCAGGTCTGGGCAGGGTGCCGACTGGGGATCTGCCCTGCCCCGCTCCCACTCC
GGGGTTGCCGTCAGGAGAGGCTGCTCACCGCACCCCACACACACTGGCCGCCACCCTTCTCCCA
AACTGGCCCACCGGCTGTGCCCGTCTTCAGTGACCCTGAGGGCACAGACCCAACTGATGTGGCC
TGTGCAGAGCTCAAAGAGCTCTGAGGACTCCCTGCCTGTCACAGTCTGCCTGGGGACAGGGGCA
GATGGGCACCCGGTGCTGCTGGAGAATTCTTACTTCAAGCCAGGCTGTTCCCTCCCTGCACGCG
TCCTTCCTGGGGGTCGCATGCAGAGGGTGGCTGGGAGCAGTCCCGTCCAGCCCTCTCCAGCCCT
CAGACACTCTTCGGAGCGCATCCTGTAGGGCCACTGCTTGCTTGTTGCTGCCCAGGGCCAGGCC
GACCCCACATGGTGGCTTCACCCCAGGTCCAGTGAGCTGCCCCGGTGACTGTGTCCACCACTTT
TGGCATCTAAGGATGGGAGGGGGGTATTTAAAATAAAATCCAAGGTGGCAGTAGAGGATTTCTT
TTGCTTTAAAATCTTTGGACTAAAAAAAATGTTTTTTATATAAAAATATATAAAGTAAATTGTT
ATGTAACTATTGTTTCCTGTATGTTCTAATTTTGTTTTATGACGTAATTAAAGGAAATAAGCTG
TGAAGACTTCTCA

hide sequence

RefSeq Acc Id:

XM_013519187 ⟹ XP_013374641

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,103,815 - 14,201,251 (-)	NCBI

Sequence:

show sequence

GCCGCTCGCGGGCGCCGTCAGGGCTGCACGTGGGGGAGGGGCGGCCCCGCCGGCGCTCGCTCCC
CCGCCTCCCGCGCGTGGGGGGGCTGTGTCCAATCAGGAGCGGCGTTGCTGGCAGGTGGGGAGTG
TTTTTGTTTTGGGTTGAAGTTGAGGCTGAGGAGAGAGCCCAGCTAGCGACAAGCGGTCATCGCG
GCCGCGGGCGCCGCGGGCGGTGGCGGAGGAGGCCCTGCCAGAGCCTAGAGGTCGCTCCTCCCCG
CGCGACTGTCCCAGCGGCGTTCCTGCTCCGCCGCGGCCGCCGCCTCCGGGTCCCGGAACTCGCG
GGCCTGCCGAGGGCCGCTCCGCTTTGCACTCCGCACGCCGCAGCGCCCTGCCCGGGCCGCACCC
GCCGGCCTCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGATGTTCTCAAATAGCGATGA
AGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTGTTACGGATATTTTCTTTCCTCGATGTC
GTTACCTTGTGTCGCTGTGCTCAGGTTTCCAGGGCCTGGAATGTTCTTGCTCTGGATGGCAGCA
ACTGGCAGCGAATTGACCTGTTTGATTTCCAGAGGGATATTGAGGGCCGAGTAGTGGAGAATAT
TTCAAAACGATGTGGAGGATTTTTACGAAAGTTAAGTCTTCGTGGGTGTCTTGGAGTAGGAGAC
AATGCATTAAGGACATTTGCACAAAACTGTAGAAATATTGAAGTACTGAATTTAAATGGATGTA
CAAAGACTACAGATGCTACATGTACTAGCCTTAGCAAGTTCTGTTCCAAACTCAGGCACCTAGA
CCTGGCTTCCTGTACGTCGATAACAAACATGTCTCTCAAAGCTCTGAGCGAGGGGTGTCCACTG
CTGGAACAACTGAACATTTCCTGGTGTGACCAAGTAACCAAGGATGGCATTCAAGCACTAGTGA
GAGGCTGCAGCGGGCTCAAGGCCTTATTCTTAAAAGGCTGCACACAGCTAGAAGATGAAGCTCT
CAAGTACATAGGTGCACATTGTCCTGAGCTGGTGACTCTGAACTTGCAGACTTGCTTACAAATC
ACAGATGAAGGTCTTATCACTATATGCAGAGGGTGCCATAAGTTGCAGTCCCTCTGTGCCTCTG
GCTGCTCCAACATCACAGATGCCATCCTGAATGCGCTAGGTCAGAACTGCCCTCGACTTAGAAT
ATTAGAAGTCGCAAGATGTTCTCAACTAACAGATGTGGGTTTTACCACCTTGGCCAGGAATTGC
CATGAGCTTGAGAAGATGGACCTGGAAGAATGTGTTCAGATAACTGATAGCACATTAATCCAAC
TTTCCATACACTGTCCTCGACTTCAAGTATTGAGTCTGTCCCACTGTGAGCTCATCACAGATGA
TGGCATCCGTCACCTGGGGAACGGGGCCTGTGCGCACGACCAGCTGGAGGTGATCGAGCTGGAC
AACTGCCCCCTCATCACTGACGCGTCCCTGGAGCACCTGAAGAGCTGCCACAGCCTGGAGCGGA
TCGAGCTGTACGACTGCCAGCAGATCACTCGCGCGGGGATCAAGAGACTCAGGACCCACTTACC
CAACATTAAAGTCCACGCCTACTTCGCACCTGTCACTCCACCCCCGTCAGTCGGGGGCAGCAGA
CAGCGCTTCTGCAGATGCTGCATCATCCTATGACACTGGAGGGCGCAGCCTCGGTGAACTGAGT
ACTTAAGAACACTCTAGAGTTACCTGGTGTCTCCAGCAGAAGTGACCCCAGTGTTCTGGGCGAG
GGTTACAGAGTGAGACAGTGACCAGGTCCCCAGAGCCACACGTACGTATGCATCCACAACCTAC
CCCACCCACTCGAGCTCTGTGGCCATGGGACTGAAGCTCGTGCTGGCTTTACCAAGTGGATTGG
TAAAACTTAACTGTTCCTTTCAGACACACCCAGAACAGCACAGGCCAACACAGAGGGAGGGCAC
TCCAGCAGACCCAGTGTTACTGCTGTGATGGTTTCTTTATTTTGTTAAGGGGTTTCTTTGGGGA
TTTTGGAACAGTAACTGCAGTCATCCAGGGTCAAGGAAAGCATGGAAAAACGATACATGATGTA
TCCAGGGACCAGAAAGAAATTTCTTTGCATCCTAGACATGGTAGCCATCACTCTGAAATGACTA
CATAGCTTCTGTGCTTCCTGTTTCCATGCCAACATGCTCAGCATGCTCGCAAAGAAGGCTGCTC
ATTCCTCCTGTGTTTTAGTACCTAGCCCAGGGGTCTCTGAAATACCACATTGAAACTGCTGCGG
TCCAGATGCGGTTACTCACTGAGATTGCACTGTCTGTGTCACATCGCGCACCTGTCTTCCACTC
TTCGTGGCTCCCCCTGCACTCTTGCTCAGTGTGTCACCTGGTCACAGTCTGCTCCTCACACTCG
GTTGTTACTCTTGGGCTATTGTGTTTACAGTTTGCATTTTGGATGATTAGTTGAGGTTATCAAA
CATTTTTAAAAGACATTATCAATAAATATTTTTTTAATTTGAAATTCTA

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Protein Sequences


Protein RefSeqs	XP_005394359	(Get FASTA)	NCBI Sequence Viewer
	XP_005394360	(Get FASTA)	NCBI Sequence Viewer
	XP_013374640	(Get FASTA)	NCBI Sequence Viewer
	XP_013374641	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022431
	ENSCLAP00000022431.1

RefSeq Acc Id:

XP_005394359 ⟸ XM_005394302

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDG
SNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNG
CTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQAL
VRGCSGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA
SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLI
QLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLE
RIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL

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RefSeq Acc Id:	XP_005394360 ⟸ XM_005394303
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VY97 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSN WQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCT KTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVR GCSGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASG CSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQL SIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERI ELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL hide sequence

RefSeq Acc Id:

XP_013374640 ⟸ XM_013519186

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDG
SNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNG
CTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQAL
VRGCSGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA
SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLI
QLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLE
RIELYDCQQITRAGIKRLRAEFLTSPHQESPR

hide sequence

RefSeq Acc Id:

XP_013374641 ⟸ XM_013519187

- Peptide Label:

isoform X4

- Sequence:

show sequence

MFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIE
GRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFC
SKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCSGLKALFLKGCT
QLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQ
NCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSH
CELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIK
RLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL

hide sequence

Protein Domains

F-box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015386	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022637	ENTREZGENE
	ENSCLAT00000022637.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	F-box_dom	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_Cys-con_subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Fbxl20	ENTREZGENE
PANTHER	F-BOX/LRR-REPEAT PROTEIN 14	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	F-box-like	UniProtKB/TrEMBL
	LRR_6	UniProtKB/TrEMBL
PROSITE	FBOX	UniProtKB/TrEMBL
SMART	FBOX	UniProtKB/TrEMBL
	LRR_CC	UniProtKB/TrEMBL
Superfamily-SCOP	RNI-like	UniProtKB/TrEMBL
UniProt	A0A8C2VY97	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Fbxl20	F-box and leucine rich repeat protein 20		F-box and leucine-rich repeat protein 20	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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