Leng8 (leukocyte receptor cluster member 8) - Rat Genome Database

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Gene: Leng8 (leukocyte receptor cluster member 8) Chinchilla lanigera
Analyze
Symbol: Leng8
Name: leukocyte receptor cluster member 8
RGD ID: 8849045
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leukocyte receptor cluster (LRC) member 8; leukocyte receptor cluster member 8 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555671,539,537 - 1,553,285 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555671,539,537 - 1,552,170 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Leng8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555671,539,537 - 1,553,285 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555671,539,537 - 1,552,170 (+)NCBIChiLan1.0ChiLan1.0
LENG8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,449,199 - 54,462,016 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,449,190 - 54,462,016 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,960,377 - 54,973,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,652,213 - 59,665,008 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,652,211 - 59,665,008NCBI
Celera1952,000,644 - 52,013,775 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,284,107 - 51,297,238 (+)NCBIHuRef
CHM1_11954,953,906 - 54,967,035 (+)NCBICHM1_1
T2T-CHM13v2.01957,542,477 - 57,555,296 (+)NCBIT2T-CHM13v2.0
Leng8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,140,014 - 4,151,176 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,140,038 - 4,151,176 (+)EnsemblGRCm39 Ensembl
GRCm3874,137,013 - 4,148,177 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,137,039 - 4,148,177 (+)EnsemblGRCm38mm10GRCm38
MGSCv3774,088,658 - 4,099,775 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,740,143 - 3,751,260 (+)NCBIMGSCv36mm8
Celera73,887,839 - 3,898,963 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.39NCBI
Leng8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,113,038 - 79,124,868 (-)NCBIGRCr8
mRatBN7.2170,040,785 - 70,052,662 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl170,040,785 - 70,052,488 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,429,252 - 75,440,952 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0183,993,569 - 84,005,269 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0177,137,155 - 77,148,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0173,722,088 - 73,734,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl173,722,088 - 73,733,788 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0174,814,175 - 74,826,049 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,452,495 - 69,464,195 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1169,531,183 - 69,542,295 (-)NCBI
Celera167,069,280 - 67,080,980 (+)NCBICelera
Cytogenetic Map1q21NCBI
LENG8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,470,526 - 60,483,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,394,523 - 62,407,608 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,395,432 - 51,408,875 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11960,236,200 - 60,249,767 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,238,383 - 60,249,584 (+)Ensemblpanpan1.1panPan2
LENG8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,844,842 - 102,856,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,844,961 - 102,857,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,906,685 - 102,918,478 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,490,545 - 103,502,329 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,490,544 - 103,502,303 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,132,608 - 103,144,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,888,274 - 102,900,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,602,267 - 103,614,056 (-)NCBIUU_Cfam_GSD_1.0
Leng8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,385,376 - 2,396,745 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886162,517 - 173,855 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936886162,509 - 173,849 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LENG8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl658,860,184 - 58,870,907 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1658,860,193 - 58,871,138 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,412,023 - 53,422,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LENG8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,152,925 - 47,165,342 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,154,960 - 47,167,942 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607327,371,699 - 27,384,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Leng8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,276,433 - 2,287,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,278,115 - 2,289,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001072   ⟹   ENSCLAP00000001033
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555671,539,537 - 1,553,285 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000001073   ⟹   ENSCLAP00000001034
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555671,542,938 - 1,544,397 (+)Ensembl
RefSeq Acc Id: XM_005413378   ⟹   XP_005413435
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555671,539,537 - 1,552,170 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005413379   ⟹   XP_005413436
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555671,539,537 - 1,552,170 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509248   ⟹   XP_013364702
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555671,539,540 - 1,549,610 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413435 (Get FASTA)   NCBI Sequence Viewer  
  XP_005413436 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364702 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001033
  ENSCLAP00000001033.1
  ENSCLAP00000001034.1
Reference Protein Sequences
RefSeq Acc Id: XP_005413436   ⟸   XM_005413379
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UIE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005413435   ⟸   XM_005413378
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UIE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364702   ⟸   XM_013509248
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000001034   ⟸   ENSCLAT00000001073
RefSeq Acc Id: ENSCLAP00000001033   ⟸   ENSCLAT00000001072
Protein Domains
PCI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001072 ENTREZGENE
  ENSCLAT00000001072.1 UniProtKB/TrEMBL
  ENSCLAT00000001073.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.990 UniProtKB/TrEMBL
InterPro PCI_dom UniProtKB/TrEMBL
  SAC3/GANP/THP3 UniProtKB/TrEMBL
  SAC3/GANP/THP3_conserved UniProtKB/TrEMBL
NCBI Gene Leng8 ENTREZGENE
PANTHER LEUKOCYTE RECEPTOR CLUSTER MEMBER 8 UniProtKB/TrEMBL
  PTHR12436 UniProtKB/TrEMBL
Pfam SAC3_GANP UniProtKB/TrEMBL
PROSITE PCI UniProtKB/TrEMBL
UniProt A0A8C2UIE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UL74_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Leng8  leukocyte receptor cluster member 8    leukocyte receptor cluster (LRC) member 8  Symbol and/or name change 5135510 APPROVED