Cst11 (cystatin 11) - Rat Genome Database

Name: Cst11
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cst11 (cystatin 11) Chinchilla lanigera

Analyze

Symbol:

Cst11

Name:

cystatin 11

RGD ID:

8836866

Description:

INVOLVED IN defense response to Gram-negative bacterium (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sperm flagellum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cystatin-11

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CST11 (cystatin 11)	NCBI	Ortholog
Mus musculus (house mouse):	Cst11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cst11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CST11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CST11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cst11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CST11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CST11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cst11 (cystatin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955415	30,445,556 - 30,453,439 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial hyperinsulinemic hypoglycemia 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to Gram-negative bacterium (ISO)

Cellular Component

cytoplasm (ISO)

nucleus (ISO)

sperm flagellum (ISO)

sperm head (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cst11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955415	30,445,556 - 30,453,439 (-)	NCBI	ChiLan1.0	ChiLan1.0

CST11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	23,450,412 - 23,452,876 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	23,450,403 - 23,452,876 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	23,431,049 - 23,433,513 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	23,379,041 - 23,381,482 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	23,379,040 - 23,381,482	NCBI
Celera	20	23,504,421 - 23,506,862 (-)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	23,392,703 - 23,395,144 (-)	NCBI		HuRef
CHM1_1	20	23,431,037 - 23,433,478 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	23,509,944 - 23,512,411 (-)	NCBI		T2T-CHM13v2.0

Cst11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	148,610,538 - 148,613,417 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	148,610,529 - 148,613,417 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	148,768,618 - 148,771,497 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	148,768,609 - 148,771,497 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	148,594,354 - 148,597,233 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	148,460,059 - 148,462,938 (-)	NCBI		MGSCv36	mm8
Celera	2	150,030,906 - 150,034,699 (-)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	73.54	NCBI

Cst11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	156,664,551 - 156,667,275 (-)	NCBI		GRCr8
mRatBN7.2	3	136,211,414 - 136,214,138 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	136,211,414 - 136,214,138 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	140,163,405 - 140,165,998 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	148,747,551 - 148,750,144 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	146,437,032 - 146,439,756 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	143,096,056 - 143,098,780 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	143,096,056 - 143,098,780 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	149,504,896 - 149,507,620 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	137,524,412 - 137,527,136 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	137,429,984 - 137,432,709 (-)	NCBI
Celera	3	135,052,841 - 135,055,541 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

CST11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	24,317,163 - 24,319,887 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	24,313,996 - 24,316,720 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	23,385,639 - 23,388,363 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	23,736,631 - 23,739,084 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	23,736,631 - 23,739,084 (-)	Ensembl	panpan1.1		panPan2

CST11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	181,410 - 184,213 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	180,692 - 184,323 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	203,332 - 205,991 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	573,867 - 576,594 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	573,905 - 576,594 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	176,259 - 178,909 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	275,596 - 278,262 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	559,406 - 562,092 (+)	NCBI		UU_Cfam_GSD_1.0

Cst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	148,695,442 - 148,699,181 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	2,115,924 - 2,119,639 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	2,115,927 - 2,119,683 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CST11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,414,051 - 30,417,127 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	30,415,161 - 30,416,984 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,503,160 - 34,505,987 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CST11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666078	7,271,760 - 7,274,744 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cst11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624741	23,104,474 - 23,106,333 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005381138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01016664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01176636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005381138 ⟹ XP_005381195

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955415	30,445,556 - 30,453,439 (-)	NCBI

Sequence:

show sequence

ATGGCTGGCCCCTGTGCAAGCACCCAGCTGGGTCGTGCAGCTAAGGGCAGTAGTGGCCATTGGC
CATCGGTCATCAGCCATCACCAGGCAGCTCAGAGCAGGAAGAGGCAGCTCCCCCGCCCCGGGCT
CAGGGACACTTGCACTGCATGCCTGGCACTACCAGCTCCAGCTCCAGCCCCTCGAAAGCACAGC
GTGCAAGCCAGCAGCAAGCTCAACTCTGCTGCCTCCTGCCCTAAGCTGGGCCTCACCTATGTGC
AGAGCAGTGACCAATACAGGAGGAGGACCTTTGTTAGTGTGAATGAAGAGACGGCGGTGGACAA
TTTCGTTCCCGAGACCCTGTACTTCCTCAATGACCAGTACAACCGAGACAGCAAGGATGCATAC
AGCTTCCGGATCATCCGGGTGCTGCAGGTGCAGAGCCAGGTGACTGACCACCTGGAGTATCACA
TCAAGGTGGAGATGCGGAGAACCACATGCCTGAAGCCAAAGTTCAGCAGCTGCCCCCCTCAGGA
TGGGGAGCAGTACAAGCAAATCAATTGCTACTTCTCGGTGCATGTGAACCCCTGGGCTGAAAAG
TACAAGATCTTGAAGAAGGAATGCAAGGATCACACCTCTCCTGTGGCCACCACCAAGAAGGATC
CCACAGCCCTCAGTGCAGATGATAAACAGGCCCGACCTCTCCCCTGACGACCTTCATGCTGTAG
TTCCATTCTTTTTCTTTTCCCTCAATTCTTCAGTTTATAATATTATAATACAGGTGTATGCTGG
GCCAACACAGTTTAGGGGGTCCAGATGAGTCTTTAGAGTTCAAAATAAGGCAGAAGAGAGAAGA
ATGAAGCATGCACAAAACACCTTAACAAGGCAACAACCCAAGAGTATCCACAGGGGAGTCTCAG
GAACCTATGAGACTCCCCACTTCATCTCAAGTAGAAAACAAGGAGAATTACGCACACACACACA
CACACACACACACACACACACACACACACACCAAGGAAGAGA

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Protein Sequences


Protein RefSeqs	XP_005381195	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005381195 ⟸ XM_005381138

- Sequence:

show sequence

MAGPCASTQLGRAAKGSSGHWPSVISHHQAAQSRKRQLPRPGLRDTCTACLALPAPAPAPRKHS
VQASSKLNSAASCPKLGLTYVQSSDQYRRRTFVSVNEETAVDNFVPETLYFLNDQYNRDSKDAY
SFRIIRVLQVQSQVTDHLEYHIKVEMRRTTCLKPKFSSCPPQDGEQYKQINCYFSVHVNPWAEK
YKILKKECKDHTSPVATTKKDPTALSADDKQARPLP

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Cst11	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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