Gene: Fam43b (family with sequence similarity 43 member B) Chinchilla lanigera
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Symbol:
Fam43b
Name:
family with sequence similarity 43 member B
RGD ID:
8815043
Description:
ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); genetic disease (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
family with sequence similarity 43, member B
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information:
Annotation category: partial on reference assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955452 1,102,362 - 1,103,383 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955452 1,102,342 - 1,104,346 (+) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Disease Annotations - ClinVar
References
Genomics
Comparative Map Data
Fam43b (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955452 1,102,362 - 1,103,383 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955452 1,102,342 - 1,104,346 (+) NCBI ChiLan1.0 ChiLan1.0
FAM43B (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 20,552,573 - 20,555,020 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 20,552,573 - 20,555,020 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 20,879,066 - 20,881,513 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 20,751,519 - 20,754,087 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 1 20,624,237 - 20,626,806 NCBI Celera 1 19,203,258 - 19,205,839 (+) NCBI Celera Cytogenetic Map 1 p36.12 NCBI HuRef 1 19,124,817 - 19,127,398 (+) NCBI HuRef CHM1_1 1 20,989,325 - 20,991,906 (+) NCBI CHM1_1 T2T-CHM13v2.0 1 20,377,527 - 20,379,974 (+) NCBI T2T-CHM13v2.0
Fam43b (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 138,121,403 - 138,123,769 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 138,121,403 - 138,123,839 (-) Ensembl GRCm39 Ensembl GRCm38 4 138,394,092 - 138,396,458 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 138,394,092 - 138,396,528 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 137,950,007 - 137,952,373 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 137,666,168 - 137,668,534 (-) NCBI MGSCv36 mm8 Celera 4 140,179,688 - 140,182,054 (-) NCBI Celera Cytogenetic Map 4 D3 NCBI cM Map 4 70.23 NCBI
Fam43b (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 155,893,961 - 155,896,359 (-) NCBI GRCr8 mRatBN7.2 5 150,610,656 - 150,613,054 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 150,611,609 - 150,612,601 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 153,307,307 - 153,309,705 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 155,081,594 - 155,083,992 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 155,063,613 - 155,066,011 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 156,809,705 - 156,813,352 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 156,810,658 - 156,811,650 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 160,557,918 - 160,561,598 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 157,172,204 - 157,173,572 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 5 149,003,847 - 149,007,181 (-) NCBI Celera Cytogenetic Map 5 q36 NCBI
FAM43B (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 206,563,648 - 206,566,092 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 205,680,501 - 205,682,945 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 19,507,816 - 19,510,389 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 20,548,840 - 20,551,146 (+) NCBI panpan1.1 PanPan1.1 panPan2
FAM43B (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Dog10K_Boxer_Tasha 2 74,874,891 - 74,876,356 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 2 78,927,713 - 78,929,179 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 2 78,927,713 - 78,928,699 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 2 75,746,329 - 75,747,795 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 2 76,758,413 - 76,759,879 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 2 77,761,686 - 77,763,152 (-) NCBI UU_Cfam_GSD_1.0
Fam43b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 40,691,965 - 40,694,965 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936474 6,517,785 - 6,518,771 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936474 6,516,059 - 6,519,749 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
FAM43B (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 78,788,138 - 78,790,616 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 78,786,703 - 78,790,619 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 72,981,263 - 72,983,935 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
FAM43B (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 112,000,653 - 112,003,917 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 112,001,708 - 112,002,700 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666033 4,225,430 - 4,229,786 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Fam43b (Heterocephalus glaber - naked mole-rat)
Expression
Sequence
RefSeq Acc Id:
ENSCLAT00000013399 ⟹ ENSCLAP00000013247
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955452 1,102,362 - 1,103,383 (+) Ensembl
RefSeq Acc Id:
XM_013519672 ⟹ XP_013375126
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955452 1,102,342 - 1,104,346 (+) NCBI
Sequence:
TGGCCCCTTCGGCCTCCGCGATGCTGCCCTGGAGACGGAACAAATTTGTGCTGGTGGAGGATGA GGCCAAGTGCAAGGCGAAAAGCCTGAGCCCGGGGCTCGCCTACACGTCGCTGCTCTCCAGCTTC CTGCGCTCCTGCCCGGACCTGCTGCCGGACTGGCCGCTGGAGCGCCTGGGCCGCGTGTTCCGCA GCCGGCGCCAGAAAGTGGAGCTGAACAAGGAGGACCCGACCTACACCGTTTGGTACCTGGGCAA CGCCGTCACCCTGCACGCCAAGGGCGACGGCTGCACCGACGACGCGGTGGGCAAGATCTGGGCG CGCTGCGGGCCGGGCGGGGGCACCAAGATGAAGCTGACGCTGGGGCCGCACGGTATCCGCATGC AGCCGTGCGAGCGCGGCGCCGCGGGGGGCTCGGGGGGCCGCAGGCCGGCGCACGCCTACCTGCT GCCGCGCATCACCTACTGCGCGGCGGACGGGCGCCACCCGCGCGTCTTCGCCTGGGTCTACCGC CACCAGGCGCGCCACAAGGCCGTGGTGCTGCGCTGCCACGCTGTGCTGCTGGCGCGGGCGCACA AGGCGCGCGCCCTGGCCCGCCTGCTCCGCCAGACCGCGCTGGCGGCCTTCAGCGACTTCAAGCG GCTGCAGCGCCAGAGCGACGCGCGCCACGTGCGCCAACAGCACCTCCGCGCCGGGGGCGCCGCT GCCTCGGTGCCCCGCGCCCCGCTGCGCCGCCTGCTCAACGCCAAGTGTGCCTACCGGCCACCGC CGACGGAGCGCGCCCGCGGAGCGCCGCGCCTCAGCAGCATCCAGGAGGAGGACGAAGAGGAGGA CGAGGAGGACGCGGAGGAGAGCGAGGGAGGAGCCCCTCAGCGCGAGCGGCCGGAGGTGCTGAGC CTGGCGCGGGAGCTGAGGACGTGCAGCCTGCGGGGTGCCCCGGCGCCGCCGCCACCTCCCGCGC ACTCCCGCCGCTGGAAAGGCGGCCCCCGGGAGCGCGCCGGACAGGCACGCTGAACTCACAGCCT CTGATCTGGCTGCCGTTGCGGCTTCCCTGGCCCCCGACCCCGCCTCCCTCGTGGTCTCAGTTGT GATCGCCTTGTCCCTCGTCCTGGCTCAGGGTGACACCTGATATGCCCTTGACTATTGGGGGATC CCCCCTCTCTCCAAGCCCGGAGTTTTCTGGGCCCTCCATTGTGGAAGTGTCCCTGTGCTCTGCA CCAAGTGTTTTTGTCCACCCACTTCCCTGCTTCTTTCCAAAACATCCTCTCAGGAGAACCGGGA GAAGTTTCCAGAAATCCAGGAGGGTGGGTTTGAACCTTGGCCCGGGTAGAGGCAGTGGCCCTGC CCTGGTCATCTTGTAATAAGAACCACCCGGAAAGGCCTTCTTGTAGGAGCAGAATCCAGTGGCT GGGGAGAATTGAGGCCAGGTCCCTGATGGACACTGAGTCTGAGGTTATAAACAGAGGGCAGAAT CCTGGACTCTGCTCAGCCTCTCTACCTGTTGGAGGACTCCCGCAACTTCACTGCTCTGCCTCTG GAAGACTAGGATGGTCCTACTGATGTTTAAAGGATAGGTTGGCCCGGTAACAGCTCTGACAGCT CTGCACCAGCCTGGGCCTTGTATTCCCACAGGATTCCCCATCGCCCCCTCTCTGCAGACAGATA AGTATGGACCACTGTAGGTATCCCACAAACAGCACCAAGACGGGCCTCCAGAGGAAGTAAGGGA AACTTCAGCAGATGTGTAGAGACACAGACTCCCCCAGCAGAGATGCCCTGAGTCAAGCAAGGCT CCAGGGGCAAGCTGTCTTGACAGCAGCTGAATTCACATAGCAGGATGAGGGAAGACAGTGTGTT CCCCCAATAGAGGGAGTGGGCCCCTGCCCAGGAGTCTCCACAGGGTTACCAAAAGTCCAAAGAT CTACATGTCACCAACTGATCGTTGTAAATAAAATGGATCTGCTTTTTCAGCCCTGT
hide sequence
RefSeq Acc Id:
XP_013375126 ⟸ XM_013519672
- Sequence:
MLPWRRNKFVLVEDEAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFRSRRQKVE LNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTLGPHGIRMQPCERGA AGGSGGRRPAHAYLLPRITYCAADGRHPRVFAWVYRHQARHKAVVLRCHAVLLARAHKARALAR LLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNAKCAYRPPPTERARG APRLSSIQEEDEEEDEEDAEESEGGAPQRERPEVLSLARELRTCSLRGAPAPPPPPAHSRRWKG GPRERAGQAR
hide sequence
RefSeq Acc Id:
ENSCLAP00000013247 ⟸ ENSCLAT00000013399
Additional Information
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2016-08-16
Fam43b
family with sequence similarity 43 member B
family with sequence similarity 43, member B
Symbol and/or name change
5135510
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