LOC102005867 (protein S100-A8) - Rat Genome Database

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Gene: LOC102005867 (protein S100-A8) Chinchilla lanigera
Analyze
Symbol: LOC102005867 (Ensembl: S100A8)
Name: protein S100-A8
RGD ID: 8814179
Description: ASSOCIATED WITH Acute Otitis Media
Type: protein-coding
RefSeq Status: MODEL
Previously known as: S100 calcium binding protein A8; S100a8
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495559273,154 - 73,843 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495559272,594 - 73,659 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. Comprehensive Proteomic and Metabolomic Signatures of Nontypeable Haemophilus influenzae-Induced Acute Otitis Media Reveal Bacterial Aerobic Respiration in an Immunosuppressed Environment. Harrison A, etal., Mol Cell Proteomics. 2016 Mar;15(3):1117-38. doi: 10.1074/mcp.M115.052498. Epub 2015 Dec 28.
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004776   ⟹   ENSCLAP00000004690
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495559273,154 - 73,843 (+)Ensembl
RefSeq Acc Id: XM_005414602   ⟹   XP_005414659
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495559272,594 - 73,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509975   ⟹   XP_013365429
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495559273,132 - 73,659 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414659 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365429 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004690
  ENSCLAP00000004690.1
Reference Protein Sequences
RefSeq Acc Id: XP_005414659   ⟸   XM_005414602
- UniProtKB: A0A8C2YK65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365429   ⟸   XM_013509975
- UniProtKB: A0A8C2YK65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004690   ⟸   ENSCLAT00000004776
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004776 ENTREZGENE
  ENSCLAT00000004776.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S100/CaBP7/8-like_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene S100a8 ENTREZGENE
PANTHER PTHR11639:SF5 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2YK65 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-07 LOC102005867  protein S100-A8  S100a8  S100 calcium binding protein A8  Symbol and/or name change 5135510 APPROVED
2016-10-20 S100a8  S100 calcium binding protein A8  LOC102005867  protein S100-A8  Name and Symbol changed 629549 APPROVED
2015-08-25 LOC102005867  protein S100-A8  S100a8  S100 calcium binding protein A8  Symbol and/or name change 5135510 APPROVED