Gltpd2 (glycolipid transfer protein domain containing 2)

Gene: Gltpd2 (glycolipid transfer protein domain containing 2) Chinchilla lanigera

Analyze

Symbol:

Gltpd2

Name:

glycolipid transfer protein domain containing 2

RGD ID:

8788145

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

glycolipid transfer protein domain-containing protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955467	10,192,527 - 10,203,765 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Gltpd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955467	10,192,527 - 10,203,765 (+)	NCBI	ChiLan1.0	ChiLan1.0

GLTPD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	4,788,964 - 4,790,589 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	4,788,964 - 4,790,589 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	4,692,259 - 4,693,884 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	4,638,994 - 4,640,425 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	4,707,456 - 4,708,887 (+)	NCBI		Celera
Cytogenetic Map	17	p13.2	NCBI
HuRef	17	4,580,501 - 4,582,131 (+)	NCBI		HuRef
CHM1_1	17	4,701,009 - 4,702,639 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	4,678,607 - 4,680,232 (+)	NCBI		T2T-CHM13v2.0

Gltpd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	70,410,035 - 70,411,562 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	70,410,022 - 70,411,562 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	70,519,209 - 70,520,736 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	70,519,196 - 70,520,736 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	70,332,711 - 70,334,238 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	70,335,404 - 70,336,931 (+)	NCBI		MGSCv36	mm8
Celera	11	78,067,529 - 78,069,056 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	42.99	NCBI

Gltpd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	55,732,199 - 55,734,974 (+)	NCBI		GRCr8
mRatBN7.2	10	55,233,563 - 55,236,125 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	55,233,571 - 55,235,233 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	59,913,547 - 59,915,201 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	59,402,052 - 59,403,706 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	54,901,144 - 54,902,798 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	57,126,127 - 57,127,783 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	57,125,961 - 57,128,686 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	56,883,707 - 56,885,363 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	57,363,864 - 57,365,520 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	54,379,950 - 54,381,606 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

GLTPD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	12,397,743 - 12,399,075 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	14,363,801 - 14,369,391 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	4,835,917 - 4,837,838 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	4,824,715 - 4,827,036 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	4,824,715 - 4,826,766 (+)	Ensembl	panpan1.1		panPan2

GLTPD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	31,781,105 - 31,784,373 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	31,782,917 - 31,784,326 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	31,920,347 - 31,923,659 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	31,886,098 - 31,889,710 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	31,887,908 - 31,889,317 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	31,852,494 - 31,856,100 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	31,812,163 - 31,815,765 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	31,989,967 - 31,991,667 (-)	NCBI		UU_Cfam_GSD_1.0

Gltpd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	52,999,815 - 53,000,596 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936677	2,899,647 - 2,901,836 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GLTPD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	52,104,504 - 52,106,130 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	52,104,501 - 52,106,134 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	54,325,402 - 54,327,616 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GLTPD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	4,264,155 - 4,266,308 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	17,370,521 - 17,373,400 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gltpd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	8,672,186 - 8,674,547 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	8,672,107 - 8,673,751 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013522215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01051551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01051552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01051553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01072144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01293693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013522215 ⟹ XP_013377669

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955467	10,192,527 - 10,203,765 (+)	NCBI

Sequence:

show sequence

TTGGTACGGGTAATCGAACTCACGACCTCACGCCTGCTGGGCAGGCGCTGTGTCGCTGAGCTAC
ATCCCGGCCCTCAAGCCCAAAGGTAACTTTGGGCCCACACCAGGCCCAGTAGAGGAGCCTGATC
TGACCCCAGCCTGTCTCTAATACCCAGGCAGCAGGCCTCTTCCTACAAACTAACTGCACATGGA
AAGGAACCGCGGGTATGGTCATTGCTATCAAATCCCCCAAATCTTTATTTTGTCCCTCATCCTG
GGTTAACTGCCCTCTAGGGCAAAGGACACAGAAATGGGGGCTTTAAGAGGTTAATTATTAACCC
TTTGTGCCTCAGGGGACCGCAGGCTTCTTTCCCATCGTGGAGGCAAAGGACACCACAGTCTCTA
GGCCATGAGGGTCGCGCTGCCGCCCCCGGCTTTGCGGCGCTGGTTCCGACACGCAACTGCTCTC
GCTATCTTCGTGCTGATGGTTTATCTGAGCGCTCGGATCCTCCGCGCCCTGTCAGGCTGCAGGC
CCGGGGCACAGTCCTGCACTCCGGAAGGACCGCTGCCCTTGCAGGTCCAGCACAAGTCGGGACT
CCTGGGGGCCGCAGGGTGGGAAGAGCCTCAGTGTCTGGGACCTCAGGGAATGCTGGGCCGCATG
ACCAGGTCCTTCCGAGACAGTCTGAAGCCCAAAGGGGATGTGGAGCTGTCGCAGTACCTGGCAG
GATGGAGGGAACTGGTCAGGTTCCTAACTCCCCTGGGCTCCGCCGTGGCTTTCGCCGCCAGCGA
GGCCTTCATGAAGGTGACAGCCCTCGAGGCTCGCGTGCAGGGCCCGGACGCCGCGCACTACACG
TCACTGGCGACCATGGCCCCGTGGGAGCGGCGCGCGGGGCTCCTGGAGCCGCCCGGCACCGCCC
CCGGGGCCCCGGCGCAGGCCTCGGGCTCGCGGACGCTGCTGCTGCTGCACCGCGCGCTGCGCTG
GTCCCAGCTCTGCCTCCACCGGGTGGCGACAGGGACGCTCGGAGGCCCCGACGCGGGCGCGCAG
TGCGGCGACGCCTACCGCACCGCCCTGGCCCCGCACCACCCCTGGCTCATCCGCCAGGCTGCCC
GCCTCGCGTTCCTCGCCCTCCCGAGCCGCGACCGCTTGCTGGAGCTGGCGTGCCCTGCAGCGGG
AGAGGCGGATGCGCGGGCTGCGCTGGCCCGGGCCGCCGGCATCTTGGAGCAGGTCTACAACCGC
ACCCAGGACCTGCTGGCCCGGCACGGCCTGCTGCAGCTGGCCTGAGGACCGCGGCGGGGCGCAA
AGCGCGCTGTGGGCAGGGCACTCAGCGCGGCCCCGGACGGCGCGCGTCCGGGTCACCCGCCCCG
GTCACCGGGGGCGGGGCGCCAGGAGAGCCCGCCCCTTCGGTGACGTCGCCGCCGCCAAGCCCCG
CCCCCGGCGGGGTGTGGTTTGGCTTCCCTGCTCCAACCGCGGTCTCAGGAAGATCCGAGGTGCT
GAGAGAAATAAAGTATGTTTTGGCAGG

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Protein Sequences


Protein RefSeqs	XP_013377669	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013377669 ⟸ XM_013522215

- Sequence:

show sequence

MRVALPPPALRRWFRHATALAIFVLMVYLSARILRALSGCRPGAQSCTPEGPLPLQVQHKSGLL
GAAGWEEPQCLGPQGMLGRMTRSFRDSLKPKGDVELSQYLAGWRELVRFLTPLGSAVAFAASEA
FMKVTALEARVQGPDAAHYTSLATMAPWERRAGLLEPPGTAPGAPAQASGSRTLLLLHRALRWS
QLCLHRVATGTLGGPDAGAQCGDAYRTALAPHHPWLIRQAARLAFLALPSRDRLLELACPAAGE
ADARAALARAAGILEQVYNRTQDLLARHGLLQLA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Gltpd2	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar